Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G18690 93 / 9e-24 unknown protein AT5G45830 86 / 5e-21 ATDOG1, GSQ5, DOG1 GLUCOSE SENSING QTL 5, delay of germination 1 (.1) AT4G18680 83 / 2e-20 unknown protein AT4G18650 47 / 6e-07 transcription factor-related (.1) AT1G58330 46 / 1e-06 ZW2 transcription factor-related (.1) AT3G14880 46 / 1e-06 unknown protein AT5G06839 42 / 5e-05 bZIP TGA10, bZIP65 TGACG \(TGA\) motif-binding protein 10, bZIP transcription factor family protein (.1.2.3) AT1G08320 41 / 7e-05 bZIP TGA9, bZIP21 TGACG \(TGA\) motif-binding protein 9, bZIP transcription factor family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015276 [exp] 169 / 2e-53 AT4G18690 204 / 6e-65 unknown protein Lus10039193 [exp] 59 / 6e-11 AT3G14880 135 / 5e-39 unknown protein Lus10025265 [exp] 52 / 1e-08 AT1G58330 122 / 3e-33 transcription factor-related (.1) Lus10042453 [exp] 50 / 9e-08 AT3G14880 145 / 3e-42 unknown protein Lus10026217 [exp] 48 / 2e-07 AT3G14880 83 / 7e-20 unknown protein Lus10013746 [exp] 48 / 3e-07 AT3G14880 141 / 5e-41 unknown protein Lus10013711 [exp] 48 / 3e-07 AT3G14880 251 / 2e-84 unknown protein Lus10027812 [exp] 47 / 6e-07 AT1G58330 116 / 1e-31 transcription factor-related (.1) Lus10029229 [exp] 43 / 2e-05 AT4G18650 207 / 2e-67 transcription factor-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G098800 [exp] 56 / 4e-10 AT3G14880 159 / 6e-48 unknown protein Potri.004G058200 [exp] 52 / 1e-08 AT4G18650 226 / 1e-74 transcription factor-related (.1) Potri.001G390100 [exp] 49 / 1e-07 AT3G14880 255 / 3e-86 unknown protein Potri.006G058800 [exp] 40 / 0.0001 AT5G06839 540 / 0.0 TGACG \(TGA\) motif-binding protein 10, bZIP transcription factor family protein (.1.2.3) Potri.009G164300 [exp] 39 / 0.0004 AT1G08320 574 / 0.0 TGACG \(TGA\) motif-binding protein 9, bZIP transcription factor family protein (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10025399 pacid=23150812 polypeptide=Lus10025399 locus=Lus10025399.g ID=Lus10025399.BGIv1.0 annot-version=v1.0 ATGCTTTCTCGACTAGATGAACCTCCAGCAACTCGATCTAACCGAGTTGCTCCACTCCGTCACCATCACAATGATGATGACTTCGTGGGGCCCACGCTGC CCGAGCTGGCAGAGAAAACCGTCGGCCACTTCCAGGACTACGCCGACAGGCGTGCGTTCCTTGCTCAAAACGACGAAGTTTCTTCCTTCTTCGCGCCGTC TTGGAACTCCCCGCTCGAGAACTCGCTCCTCTGGCTCGCAGGGTGCCGCCCTTCCATGTTCATCCGCTTGCTCTACGCCCTGCTTGGGTCCCAGCTCGAC CAATCTATTTCCTCGGCCGCGGCCAACGAAGACGAAGACCAGGAAGAGAGTAATGGTGTTTGTACGGCGGCGGCTGCCGGGAATCTCGGGACCTGTCGTG GAGGCAGAGGAATACGGTGA
AA sequence Show only first row Show all	>Lus10025399 pacid=23150812 polypeptide=Lus10025399 locus=Lus10025399.g ID=Lus10025399.BGIv1.0 annot-version=v1.0 MLSRLDEPPATRSNRVAPLRHHHNDDDFVGPTLPELAEKTVGHFQDYADRRAFLAQNDEVSSFFAPSWNSPLENSLLWLAGCRPSMFIRLLYALLGSQLD QSISSAAANEDEDQEESNGVCTAAAAGNLGTCRGGRGIR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G18690			unknown protein		Lus10025399 [exp]	0	1
AT1G60170		EMB1220	embryo defective 1220, pre-mRN...		Lus10002830 [exp]	1.4	0.8315
AT3G07360		ATPUB9	ARABIDOPSIS THALIANA PLANT U-B...		Lus10024776 [exp]	4.0	0.8441
AT3G13400		SKS13	SKU5 similar 13 (.1)		Lus10010358 [exp]	6.5	0.8041
AT3G14470			NB-ARC domain-containing disea...		Lus10011855 [exp]	18.7	0.7156
AT5G24670		TAD3, EMB2820	tRNA adenosine deaminase 3, EM...		Lus10040753 [exp]	24.0	0.7784
AT4G27280			Calcium-binding EF-hand family...		Lus10039724 [exp]	26.4	0.7587
AT5G19440			NAD(P)-binding Rossmann-fold s...		Lus10008669 [exp]	26.8	0.7996
AT1G66370	MYB	ATMYB113	myb domain protein 113 (.1)		Lus10028513 [exp]	32.0	0.7360
AT1G03495			HXXXD-type acyl-transferase fa...		Lus10039720 [exp]	34.6	0.7264
					Lus10009699 [exp]	34.8	0.7695

Compare expression of checked genes

Lus10025399 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.