Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45840 580 / 0 Leucine-rich repeat protein kinase family protein (.1.2) AT4G18640 447 / 1e-148 MRH1 morphogenesis of root hair 1, Leucine-rich repeat protein kinase family protein (.1) AT2G40270 328 / 3e-105 Protein kinase family protein (.1.2) AT3G56050 322 / 1e-102 Protein kinase family protein (.1.2) AT5G58540 288 / 1e-91 Protein kinase superfamily protein (.1.2.3) AT5G07150 291 / 2e-90 Leucine-rich repeat protein kinase family protein (.1) AT1G63430 226 / 9e-65 Leucine-rich repeat protein kinase family protein (.1.2) AT5G41180 208 / 2e-58 leucine-rich repeat transmembrane protein kinase family protein (.1) AT5G02800 143 / 3e-37 CDL1 CDG1-like 1, Protein kinase superfamily protein (.1) AT1G61860 139 / 9e-36 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015277 [exp] 1088 / 0 AT5G45840 548 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10029228 [exp] 478 / 6e-164 AT5G45840 444 / 5e-151 Leucine-rich repeat protein kinase family protein (.1.2) Lus10007281 [exp] 461 / 5e-153 AT5G45840 568 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10031290 [exp] 390 / 5e-127 AT4G18640 457 / 7e-153 morphogenesis of root hair 1, Leucine-rich repeat protein kinase family protein (.1) Lus10031860 [exp] 381 / 2e-123 AT5G45840 491 / 4e-166 Leucine-rich repeat protein kinase family protein (.1.2) Lus10017439 [exp] 336 / 7e-106 AT5G45840 457 / 1e-152 Leucine-rich repeat protein kinase family protein (.1.2) Lus10007516 [exp] 333 / 1e-104 AT5G45840 463 / 4e-155 Leucine-rich repeat protein kinase family protein (.1.2) Lus10008310 [exp] 276 / 1e-82 AT1G63430 857 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10008018 [exp] 271 / 2e-81 AT1G63430 846 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G058100 [exp] 630 / 0 AT4G18640 694 / 0.0 morphogenesis of root hair 1, Leucine-rich repeat protein kinase family protein (.1) Potri.011G067400 [exp] 595 / 0 AT4G18640 678 / 0.0 morphogenesis of root hair 1, Leucine-rich repeat protein kinase family protein (.1) Potri.009G075400 [exp] 376 / 4e-121 AT2G40270 449 / 9e-152 Protein kinase family protein (.1.2) Potri.001G280200 [exp] 373 / 1e-119 AT2G40270 430 / 2e-144 Protein kinase family protein (.1.2) Potri.008G072100 [exp] 355 / 8e-114 AT2G40270 451 / 2e-153 Protein kinase family protein (.1.2) Potri.010G185300 [exp] 340 / 8e-108 AT2G40270 434 / 1e-146 Protein kinase family protein (.1.2) Potri.001G106600 [exp] 304 / 6e-94 AT1G63430 839 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.003G124800 [exp] 275 / 1e-82 AT1G63430 858 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.013G025700 [exp] 153 / 2e-40 AT1G54820 438 / 7e-152 Protein kinase superfamily protein (.1) Potri.006G173800 [exp] 146 / 4e-38 AT1G52540 344 / 4e-117 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10025400 pacid=23150852 polypeptide=Lus10025400 locus=Lus10025400.g ID=Lus10025400.BGIv1.0 annot-version=v1.0 ATGGAGGGGAGATCATCGTCGTCACGGAACAACATTGGGACACAATTTCTGTGCTTCTTGGTTTTCATTGTTAGTGTTGAAATTCGTGGCTCTTGGTCAC TTAATGATGAAGAGTTGATACTTTTTGAATTTCGAACTAGGGTCAGGTCTGATCCGTACGGTGTTTTAGATAATTGGAATCTTCGCGACGACGATCCTTG TTTGTGGTATGGAGTTCGTTGCGTTGCCGGCAAAGTGCAAATACTGAATTTGAGTGGGTGTTCATTGGAAGGCACATTGACACCTGAAATTGGGAAACTT GTCAGCTTGAGATCGTTATTATTGCGCGACAATTGTTTCTACGGTGTTCTTCCAATAGAGATTGCCAATCTTAAGAAGCTCGAGATACTAGACGTTAGAG ATAATGATTTCAGCGGCACGATTCCGACAGAAATCGGGAGACTACAAACGTTGAAGTGCTTGTGGGTGAGTGGCAACAAATTTGAAGGAATTATTCCAGG AGAAATGAGGAGGCTTAAACTACTATCCCATTTGGAACTTGATGGCACCCTTGTATCTACTTCATTCACAGGATACAACGATGCAAACAGTATGTCCGAA AAAGCATTGTGGAGGACAAGACTCAAACATCCGAGGAAAGAAGCGACATTGCGTAGAAGGCTTCAAGAACAACAACAACTATTACAACAACCAGCTAGCA ACCTTGCAGCTTTACCTCCTAGCAACACGCAACCCTCACAGGACATGATCAGCTCCGTTCCGATTACAAGAGGAAGTGGCACTTTCCCAGCAATACCGGA TTCGAAATCGCAACCTAACACCGATGCTTCCTCACATGACGAATATGGTCCCGGTGATCATGACCAGGAACCTGCTAAAAAGGGGCCAATCGAACACAAC CATGGACCATGGGATGCTTGGTGGTACTTCTTCCTCGCTCTAATGGTGGTTTTCTTGTTGGCATTGATGGTGGTTCTTCTAATTTTGTGTCGTAGACGAA GCGGAAAGACTATTACCCCTTGGAAGACCGGGATCAGCGGGCAGCTGCAGAAGGCTTTTGTTTCAGGGGTTCCGAAATTAAATAGGCTAGAGTTGGAAAC TGCTTGTGAAGAGTTTAGCAATATAATAGAACAATTCGACGGTGGCACGGTGTACAAGGGAACATTGTCTAGCGGAGTTGAGATCGCTGTCGTTTCGACG AGTACAACTTCTCTTAAAGAGTGGTCAAAGACTGAAGAAAAGGCATATCATAAACAGATTAATACACTGTCAAGAGTCAACCACAAGAACTTTGTAAACC TTATCGGCTTCTGCGAGGAAAACGAACCATTCACTCGGGTCATGGTGTTTGAATACGCTCCAAACGGATCGCTTTTCGAACATATTCACGATAAACATAT GGAACATCTTGATTGGACATCTCGGATGCGAATCATCATGGGTGTGGCGTACTGCTTGAAACATATGCATCACGATACGACTCCGCCCGTATCTCACACG TATTTGACTTCACAAAAAGTGTACTTGTCCGACGATTATGCAGCTAAGATTGTGGAAGTTCCATTTCTGTCACACCATGCATCGAAAGCGAAACCGAATG TAGATGATCAAGATGATGGTACAGAGTTGCCTGCAATCATTGACCCTGAAACTAACGTGTATAGTTTTGGTGTAATAGCGTTGGAAGTCCTAACTGGGAA GCCACCTCACTCGGAAGAAGATGGCCCCATAGAGAAATGGGCAGCCAAGTATCTAGAAGACAAGAGTAAGCTTTCGGAGATGGCGGACCCATCACTGAAA GCAAACTTCAAGATCAAAGACTTCGAGGTATTGTGTGAGGTAGCTCAGGAATGCGTAAAGCCGGATCCAAGGCAGAGACCTCTGATGAAGGACATCCTTC CTCGACTACGAGAAGTCATCGGTATCACATTTGAGCAAGCAGTGCCTAGGTTGTCTCCATTGTGGTGGGCGGAACTCGAGCTGTTAGAAGACTCTTGA
AA sequence Show only first row Show all	>Lus10025400 pacid=23150852 polypeptide=Lus10025400 locus=Lus10025400.g ID=Lus10025400.BGIv1.0 annot-version=v1.0 MEGRSSSSRNNIGTQFLCFLVFIVSVEIRGSWSLNDEELILFEFRTRVRSDPYGVLDNWNLRDDDPCLWYGVRCVAGKVQILNLSGCSLEGTLTPEIGKL VSLRSLLLRDNCFYGVLPIEIANLKKLEILDVRDNDFSGTIPTEIGRLQTLKCLWVSGNKFEGIIPGEMRRLKLLSHLELDGTLVSTSFTGYNDANSMSE KALWRTRLKHPRKEATLRRRLQEQQQLLQQPASNLAALPPSNTQPSQDMISSVPITRGSGTFPAIPDSKSQPNTDASSHDEYGPGDHDQEPAKKGPIEHN HGPWDAWWYFFLALMVVFLLALMVVLLILCRRRSGKTITPWKTGISGQLQKAFVSGVPKLNRLELETACEEFSNIIEQFDGGTVYKGTLSSGVEIAVVST STTSLKEWSKTEEKAYHKQINTLSRVNHKNFVNLIGFCEENEPFTRVMVFEYAPNGSLFEHIHDKHMEHLDWTSRMRIIMGVAYCLKHMHHDTTPPVSHT YLTSQKVYLSDDYAAKIVEVPFLSHHASKAKPNVDDQDDGTELPAIIDPETNVYSFGVIALEVLTGKPPHSEEDGPIEKWAAKYLEDKSKLSEMADPSLK ANFKIKDFEVLCEVAQECVKPDPRQRPLMKDILPRLREVIGITFEQAVPRLSPLWWAELELLEDS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G45840			Leucine-rich repeat protein ki...		Lus10025400 [exp]	0	1
AT1G07480			Transcription factor IIA, alph...		Lus10004981 [exp]	1.0	0.9259
AT5G07990		CYP75B1, D501, ...	TRANSPARENT TESTA 7, CYTOCHROM...		Lus10040525 [exp]	7.1	0.7634
AT5G13930		ATCHS, TT4, CHS	TRANSPARENT TESTA 4, CHALCONE ...		Lus10041508 [exp]	13.2	0.7474
AT5G08110			nucleic acid binding;ATP-depen...		Lus10013505 [exp]	15.7	0.7462
AT5G59380		MBD6, ATMBD6	methyl-CPG-binding domain 6 (....		Lus10029564 [exp]	17.7	0.7382
AT1G77460			Armadillo/beta-catenin-like re...		Lus10029690 [exp]	18.2	0.7350
AT4G02250			Plant invertase/pectin methyle...		Lus10008201 [exp]	19.3	0.7047
AT4G25650		TIC55-IV, PTC52...	TRANSLOCON AT THE INNER ENVELO...		Lus10025414 [exp]	21.4	0.7116
AT3G04910		ATWNK1, ZIK4, W...	with no lysine (K) kinase 1 (....		Lus10010547 [exp]	21.8	0.7213
AT1G69940		ATPPME1	Pectin lyase-like superfamily ...		Lus10016711 [exp]	24.6	0.7071

Compare expression of checked genes

Lus10025400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.