Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015279 [exp] 91 / 1e-24 AT5G59320 116 / 6e-35 lipid transfer protein 3 (.1) Lus10015278 [exp] 63 / 1e-13 AT5G59310 110 / 1e-32 lipid transfer protein 4 (.1) Lus10025401 [exp] 44 / 5e-06 AT4G25650 100 / 1e-24 TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2)
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10025402 pacid=23150805 polypeptide=Lus10025402 locus=Lus10025402.g ID=Lus10025402.BGIv1.0 annot-version=v1.0 ATGAACACAGCTGATTGGGGCATTGCTATCAATGGCATAGGTAATAAGTGTAAGAGCCCTAGCGGTTGGACAGGTCATATGTCGGTTAACGGTGGGGCTA ATAGGGTAGCCAACGTTGACGCCGCACTTCCCGGGAAGGCGGCCGGCGTTGCCATAGTTGATAACGGGAATACCGGCGGAGGTGGATTTCAAGCAGCGGC ACGCCGTCTACTTGTCTGGGGTGGTGATGACGGCGGCGTTAAGGGACTTGACCCCGCTACAGCAGGCAGCGTCACTGCTCCCATATCCCTAAGGTATAGG ACGCAGAGTGCCAGTTTGGACGCCACCTGGCCGCAACTCACCGCCCCCCCCCCGGGCAAGGTGGGAAGTGGCCACCATCACCACCATCAATAA
AA sequence Show only first row Show all	>Lus10025402 pacid=23150805 polypeptide=Lus10025402 locus=Lus10025402.g ID=Lus10025402.BGIv1.0 annot-version=v1.0 MNTADWGIAINGIGNKCKSPSGWTGHMSVNGGANRVANVDAALPGKAAGVAIVDNGNTGGGGFQAAARRLLVWGGDDGGVKGLDPATAGSVTAPISLRYR TQSASLDATWPQLTAPPPGKVGSGHHHHHQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10025402 [exp]	0	1
AT1G25270			nodulin MtN21 /EamA-like trans...		Lus10012693 [exp]	1.0	0.9233
AT5G36930			Disease resistance protein (TI...		Lus10041606 [exp]	2.4	0.8732
AT4G31370		FLA5	FASCICLIN-like arabinogalactan...		Lus10026223 [exp]	3.2	0.8649
AT5G18470			Curculin-like (mannose-binding...		Lus10004765 [exp]	5.3	0.8544
					Lus10010397 [exp]	15.8	0.8775
AT4G12300		CYP706A4	"cytochrome P450, family 706, ...		Lus10032216 [exp]	16.1	0.8720
AT5G52390			PAR1 protein (.1)		Lus10016450 [exp]	17.3	0.8718
AT5G13240			transcription regulators (.1)		Lus10034638 [exp]	22.0	0.8729
AT3G27810	MYB	AtMYB3, ATMYB21	ARABIDOPSIS THALIANA MYB DOMA...		Lus10013081 [exp]	26.7	0.7968
AT4G37470			alpha/beta-Hydrolases superfam...		Lus10037651 [exp]	27.8	0.7912

Compare expression of checked genes

Lus10025402 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.