Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G29240 113 / 3e-26 Protein of unknown function (DUF688) (.1) AT2G34170 71 / 2e-12 Protein of unknown function (DUF688) (.1), Protein of unknown function (DUF688) (.2) AT5G45850 60 / 2e-09 Protein of unknown function (DUF688) (.1) AT4G18630 57 / 2e-08 Protein of unknown function (DUF688) (.1) AT2G30990 50 / 3e-06 Protein of unknown function (DUF688) (.1), Protein of unknown function (DUF688) (.2), Protein of unknown function (DUF688) (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015280 [exp] 745 / 0 AT5G45850 170 / 2e-45 Protein of unknown function (DUF688) (.1) Lus10007276 [exp] 368 / 4e-121 AT1G29240 167 / 5e-45 Protein of unknown function (DUF688) (.1) Lus10029223 [exp] 364 / 9e-119 AT1G29240 168 / 5e-45 Protein of unknown function (DUF688) (.1) Lus10025405 [exp] 48 / 4e-07 ND 40 / 1e-05 Lus10020709 [exp] 45 / 0.0001 AT2G30990 130 / 1e-32 Protein of unknown function (DUF688) (.1), Protein of unknown function (DUF688) (.2), Protein of unknown function (DUF688) (.3) Lus10033602 [exp] 45 / 0.0002 AT2G30990 169 / 5e-45 Protein of unknown function (DUF688) (.1), Protein of unknown function (DUF688) (.2), Protein of unknown function (DUF688) (.3) Lus10017644 [exp] 45 / 0.0002 AT2G30990 160 / 9e-42 Protein of unknown function (DUF688) (.1), Protein of unknown function (DUF688) (.2), Protein of unknown function (DUF688) (.3) Lus10029830 [exp] 44 / 0.0002 AT2G30990 139 / 2e-35 Protein of unknown function (DUF688) (.1), Protein of unknown function (DUF688) (.2), Protein of unknown function (DUF688) (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G067000 [exp] 112 / 6e-26 AT1G29240 156 / 2e-40 Protein of unknown function (DUF688) (.1) Potri.004G057800 [exp] 112 / 1e-25 AT1G29240 206 / 1e-57 Protein of unknown function (DUF688) (.1) Potri.014G142800 [exp] 57 / 3e-08 AT2G30990 252 / 8e-75 Protein of unknown function (DUF688) (.1), Protein of unknown function (DUF688) (.2), Protein of unknown function (DUF688) (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05097 [flax] [poplar] DUF688 Protein of unknown function (DUF688)
Representative CDS sequence Show only first row Show all	>Lus10025403 pacid=23150835 polypeptide=Lus10025403 locus=Lus10025403.g ID=Lus10025403.BGIv1.0 annot-version=v1.0 ATGGAGGAGAGGAAGCTGAATCTCAACGCGCCACTTCTGTCAGTGAGGCGATTCTCTTCTCCAATCCGAGCTACCAGAGATTCGAAGACTCATCATGATC AGGAGGATGATTCCAAGCTTCTTCTTCACAGGCGATACTCTCTTCCATGTCTGGATCAGCAGCAGGTTACGGAGCCTGTGGCGGTTCCGTTCCATTGGGA GCAAATCCCAGGAAGGAGAAAGGATAACGATGAAGGTAATAGTGGTTCTTCGAGGTTTTCCATTAGATGGATTCCTAGCATTGTGAAGAATCAGGAGGTG AAATCTACCTCTGAAATTAAGAGCTTGGTCGTTGGTAGAGTGAAATCAGAAGGTAATGATCATGAAGATGATGATGATGATGATAAGTTCTCTGATGCGC TTGAATCCTTATCTGCGATGGATTCCTGCTCTATGAAATGCAGCTCGAATGGTATGAGCAGTTCTTCCAATTGCTTGCAATCAGGGAATTTCGAAACTGA TCCAAAGACTCGAGATTTCATGATGAGTCGATTCTTGCCTGCTGCAAAGGCGATGACTTTGGATCAACAGCCTCAGTACTCTGCAAAGAAGCAGCAGCAA CAACAGCAACAGCAACAGTCGTGGCCGATTGCTGTTGTTAGCCGACTCGAGTCGTCTGCTGCTATTGTTCCTTACTTCCATCCCAAGGAAGAGAGTGAAG AAGAAGACTGCGATGATGATGATGATGATGAATATGAAGAAGAGTCTGTGAGTTTGCCAATGAAAGGTTGTGGGTTATTCTTGCCTCGTTTGTGCTTTAA AAACTCGATTTGCCTCTTCAGTCCTGTTCCTGGGATGAAAGTTAAAAGCTTGAATTCGTTCTCTTCCTCCTCAACTGGGAAAGCCAGTAAGCCTAGTAAG GCTGCGTCTAGTAGTTCATCCAGCAGTCCAAGTACCAGAAAGAGCTCTAAGGATGATGCAAGAAAACAAAGGCCAAGCAGAGGAGTTCAACCACCTAGGA CGATGGAGGTTGACAACAATAAGCTAGTCGGCGGATCCGACAGCTTTAGTGAAAGGCAAATGAGTGGTAGGATATCTCCGTTTAGCAGACGCTCAAACGG GCTATCCCCATACCGGAATAGCGCACCACAGTCCCCGTTCGGAGGAACAGGAGTACCTCGAGGTTTGTCCAAAGAAGCTGAGATGTTCAAGAGGAACAAG CCGTACTTGTACTGTAAAGGTGGTAGCAAGTCTCAGGAACTCACTCCTCTTTATCGCACCAACCAAGCTGCAGAACTCAAAACTTCGGAGTCGTCCTCGT TGCTCAAACGAAGCTCAGATTCCTCAGAAGTGATTATGGGAAATGCAACAGGAAAGGAGCTCATGGTTGTTCCGAAAACCAATGGAAATGATGTTTGTGG AGAATTATCCAAAGCCTTGGTATGTGTAAGTGGGAACGTTGATGCAGGGCTAGACACTGTTTCGTCAGGGGATCCGTCGTCTCTTCCTCCTGTCCTGCTT AAGACGCCTTCGGAGTCGTGGCTTTGGCGAACTCTGCCTGAAGTCTCGTCGAGGAGCCGCGCTCCAATGGGTCGTGCATCGAGTTTCCAGGGCAAATGGG TCGATTCAAAGACGAGTTCAACTACAACAGCAACTAGCAAGTGGGAGACCATGGTGAAATCTTCCTATTTGCATCATGATCATGTCCGTTACTCCGAGGT TAATCCATCCACATTTCTCTCAAATCATCATCCTGCAAGTTCTAAGTTCTAA
AA sequence Show only first row Show all	>Lus10025403 pacid=23150835 polypeptide=Lus10025403 locus=Lus10025403.g ID=Lus10025403.BGIv1.0 annot-version=v1.0 MEERKLNLNAPLLSVRRFSSPIRATRDSKTHHDQEDDSKLLLHRRYSLPCLDQQQVTEPVAVPFHWEQIPGRRKDNDEGNSGSSRFSIRWIPSIVKNQEV KSTSEIKSLVVGRVKSEGNDHEDDDDDDKFSDALESLSAMDSCSMKCSSNGMSSSSNCLQSGNFETDPKTRDFMMSRFLPAAKAMTLDQQPQYSAKKQQQ QQQQQQSWPIAVVSRLESSAAIVPYFHPKEESEEEDCDDDDDDEYEEESVSLPMKGCGLFLPRLCFKNSICLFSPVPGMKVKSLNSFSSSSTGKASKPSK AASSSSSSSPSTRKSSKDDARKQRPSRGVQPPRTMEVDNNKLVGGSDSFSERQMSGRISPFSRRSNGLSPYRNSAPQSPFGGTGVPRGLSKEAEMFKRNK PYLYCKGGSKSQELTPLYRTNQAAELKTSESSSLLKRSSDSSEVIMGNATGKELMVVPKTNGNDVCGELSKALVCVSGNVDAGLDTVSSGDPSSLPPVLL KTPSESWLWRTLPEVSSRSRAPMGRASSFQGKWVDSKTSSTTTATSKWETMVKSSYLHHDHVRYSEVNPSTFLSNHHPASSKF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G18630			Protein of unknown function (D...		Lus10025403 [exp]	0	1
AT1G30360		ERD4	early-responsive to dehydratio...		Lus10024894 [exp]	1.7	0.9114
AT1G30360		ERD4	early-responsive to dehydratio...		Lus10022924 [exp]	2.0	0.9059
AT5G45850			Protein of unknown function (D...		Lus10015280 [exp]	4.6	0.8706
AT3G50120			Plant protein of unknown funct...		Lus10011501 [exp]	6.9	0.8490
AT1G69160			unknown protein		Lus10019172 [exp]	7.0	0.8466
AT2G40820			unknown protein		Lus10038998 [exp]	7.5	0.8570
AT1G64760			O-Glycosyl hydrolases family 1...		Lus10002633 [exp]	8.1	0.8332
AT5G22930			Protein of unknown function (D...		Lus10021419 [exp]	10.1	0.8060
AT3G19960		ATM1, ATATM	myosin 1 (.1.2)		Lus10010173 [exp]	12.8	0.8555
AT4G30710		QWRF8	QWRF domain containing 8, Fami...		Lus10010780 [exp]	15.0	0.8301

Compare expression of checked genes

Lus10025403 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.