Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05550 169 / 1e-51 Trihelix sequence-specific DNA binding transcription factors (.1.2) AT3G58630 145 / 2e-41 Trihelix sequence-specific DNA binding transcription factors (.1) AT3G14180 136 / 3e-37 Trihelix ASIL2 Arabidopsis 6B-interacting protein 1-like 2, sequence-specific DNA binding transcription factors (.1) AT3G11100 117 / 2e-31 Trihelix sequence-specific DNA binding transcription factors (.1) AT1G54060 103 / 2e-25 Trihelix ASIL1 6B-interacting protein 1-like 1 (.1) AT3G10030 87 / 3e-19 Trihelix aspartate/glutamate/uridylate kinase family protein (.1.2) AT3G24490 75 / 3e-15 Trihelix Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1) AT3G54390 74 / 5e-15 Trihelix sequence-specific DNA binding transcription factors (.1) AT2G44730 71 / 1e-13 Trihelix Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1) AT3G24860 55 / 1e-08 Trihelix Homeodomain-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025406 [exp] 400 / 4e-142 AT3G14180 202 / 3e-63 Arabidopsis 6B-interacting protein 1-like 2, sequence-specific DNA binding transcription factors (.1) Lus10015282 [exp] 258 / 2e-87 AT3G58630 140 / 3e-41 sequence-specific DNA binding transcription factors (.1) Lus10007273 [exp] 211 / 4e-67 AT3G14180 200 / 4e-62 Arabidopsis 6B-interacting protein 1-like 2, sequence-specific DNA binding transcription factors (.1) Lus10015281 [exp] 146 / 2e-44 AT3G58630 79 / 2e-18 sequence-specific DNA binding transcription factors (.1) Lus10029220 [exp] 109 / 4e-30 AT3G14180 74 / 4e-17 Arabidopsis 6B-interacting protein 1-like 2, sequence-specific DNA binding transcription factors (.1) Lus10013179 [exp] 109 / 3e-27 AT3G14180 256 / 5e-81 Arabidopsis 6B-interacting protein 1-like 2, sequence-specific DNA binding transcription factors (.1) Lus10020652 [exp] 107 / 4e-26 AT5G16860 344 / 2e-106 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10008141 [exp] 105 / 4e-26 AT3G14180 271 / 3e-87 Arabidopsis 6B-interacting protein 1-like 2, sequence-specific DNA binding transcription factors (.1) Lus10035893 [exp] 94 / 4e-22 AT3G24490 214 / 1e-66 Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G118600 [exp] 215 / 6e-69 AT3G58630 139 / 5e-39 sequence-specific DNA binding transcription factors (.1) Potri.001G113600 [exp] 208 / 3e-66 AT3G58630 138 / 1e-38 sequence-specific DNA binding transcription factors (.1) Potri.001G026000 [exp] 120 / 1e-31 AT3G14180 186 / 1e-54 Arabidopsis 6B-interacting protein 1-like 2, sequence-specific DNA binding transcription factors (.1) Potri.T126206 [exp] 118 / 8e-31 AT3G14180 173 / 9e-50 Arabidopsis 6B-interacting protein 1-like 2, sequence-specific DNA binding transcription factors (.1) Potri.003G200000 [exp] 116 / 4e-30 AT3G14180 172 / 2e-49 Arabidopsis 6B-interacting protein 1-like 2, sequence-specific DNA binding transcription factors (.1) Potri.008G071300 [exp] 112 / 2e-29 AT5G05550 209 / 3e-67 sequence-specific DNA binding transcription factors (.1.2) Potri.001G179800 [exp] 87 / 3e-19 AT3G24490 206 / 2e-63 Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1) Potri.008G027000 [exp] 83 / 7e-18 AT3G10030 457 / 2e-157 aspartate/glutamate/uridylate kinase family protein (.1.2) Potri.010G186200 [exp] 78 / 8e-17 AT5G05550 149 / 3e-44 sequence-specific DNA binding transcription factors (.1.2) Potri.003G195300 [exp] 78 / 2e-16 AT3G54390 288 / 2e-96 sequence-specific DNA binding transcription factors (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10025404 pacid=23150872 polypeptide=Lus10025404 locus=Lus10025404.g ID=Lus10025404.BGIv1.0 annot-version=v1.0 ATGGGAGACCTCACCGATTCCGGCACCACCCCAAATCCCAACGCTAATTCATCCACCTCCCGGCCGATGCCAATCCGGGAAGACTGCTGGAGCGAGGAAG CAACGGCGACCTTAGTCGACGCTTGGGGGAACCGCTACCTCGAGCTGAACCGCGGCAACCTCCGCCAGAAGGACTGGAAAGACGTCGCTGATACGGTCAA TTCCATCCACGGCCTTACGAAAAAGACTTACCGCACCGATGTCCAGTGCAAGAACCGCGTCGACACCATAAAAAAGAAGTACAAGGTGGAGAAAACCCGC GTCGCCGCCTCCAACGGCGCCATAACCTCCTCCTGGCGATTCTTCGACCGATTGGATTCGCTGATCGGATCCAATTTCTCGTCCTCGGCCAAACAGCTGC GGCAGAGGGAATCTCTATCGCCTTCGCCTCCGGTTGGGCTACCGTTGAACAATTACCGGCGGACGACGGCAGACCCCGCGATGGGGAGGAATTCCTCGCC TGCGGCTGCTGCTGCTGCTGCGGCGGAGTCGGAGAGTGAGGAGGAGGAGGAGGAGAAAGAGGAGGAGGTGGATGAGGAAGGGGAAGAGGTGAGGAGGTTG GGGAAGGCGATAGAGAGGTTTGGAGAAGTGTACGAGAGAGTGGAGGGTGAGAAGTTGAGGAAGATGGTGGAATTGGAGAAGCAAAGGATGAAGTTTGCTA AGGATTTGGAGATGGAGAGGATGAGGATGTTCTCAGAGACTCAGATCCAGCTGGAGAAGATCAAAAGGGGGAAGAAGAAGCAACGAACTTCTGGTGGGAA TGTTGATATATGA
AA sequence Show only first row Show all	>Lus10025404 pacid=23150872 polypeptide=Lus10025404 locus=Lus10025404.g ID=Lus10025404.BGIv1.0 annot-version=v1.0 MGDLTDSGTTPNPNANSSTSRPMPIREDCWSEEATATLVDAWGNRYLELNRGNLRQKDWKDVADTVNSIHGLTKKTYRTDVQCKNRVDTIKKKYKVEKTR VAASNGAITSSWRFFDRLDSLIGSNFSSSAKQLRQRESLSPSPPVGLPLNNYRRTTADPAMGRNSSPAAAAAAAAESESEEEEEEKEEEVDEEGEEVRRL GKAIERFGEVYERVEGEKLRKMVELEKQRMKFAKDLEMERMRMFSETQIQLEKIKRGKKKQRTSGGNVDI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G14180	Trihelix	ASIL2	Arabidopsis 6B-interacting pr...		Lus10025404 [exp]	0	1
AT2G36780			UDP-Glycosyltransferase superf...		Lus10014438 [exp]	2.4	0.7852
AT3G51970		ATASAT1, ASAT1,...	ARABIDOPSIS THALIANA STEROL O-...		Lus10039576 [exp]	3.7	0.7508
AT5G44120		ATCRA1, CRU1, C...	CRUCIFERINA, RmlC-like cupins ...		Lus10024891 [exp]	7.1	0.8055
AT3G29635			HXXXD-type acyl-transferase fa...		Lus10033599 [exp]	9.2	0.7718
AT5G39030			Protein kinase superfamily pro...		Lus10027116 [exp]	11.8	0.7737
AT5G54680	bHLH	bHLH105, ILR3	iaa-leucine resistant3, basic ...		Lus10011167 [exp]	12.6	0.7498
AT3G58630	Trihelix		sequence-specific DNA binding ...		Lus10015281 [exp]	13.0	0.7707
AT5G14890			NHL domain-containing protein ...		Lus10001942 [exp]	13.0	0.7293
AT4G25000		AMY1, AMY3, ATA...	alpha-amylase-like (.1)		Lus10042655 [exp]	13.0	0.7583
AT5G54680	bHLH	bHLH105, ILR3	iaa-leucine resistant3, basic ...		Lus10043076 [exp]	13.3	0.7584

Compare expression of checked genes

Lus10025404 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.