Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05550 144 / 7e-42 Trihelix sequence-specific DNA binding transcription factors (.1.2) AT3G58630 140 / 1e-39 Trihelix sequence-specific DNA binding transcription factors (.1) AT3G14180 132 / 1e-35 Trihelix ASIL2 Arabidopsis 6B-interacting protein 1-like 2, sequence-specific DNA binding transcription factors (.1) AT3G11100 118 / 7e-32 Trihelix sequence-specific DNA binding transcription factors (.1) AT1G54060 105 / 9e-26 Trihelix ASIL1 6B-interacting protein 1-like 1 (.1) AT3G10030 84 / 8e-18 Trihelix aspartate/glutamate/uridylate kinase family protein (.1.2) AT3G54390 77 / 6e-16 Trihelix sequence-specific DNA binding transcription factors (.1) AT3G24490 76 / 1e-15 Trihelix Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1) AT2G44730 67 / 2e-12 Trihelix Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1) AT3G24860 57 / 3e-09 Trihelix Homeodomain-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025404 [exp] 396 / 3e-140 AT3G14180 197 / 1e-61 Arabidopsis 6B-interacting protein 1-like 2, sequence-specific DNA binding transcription factors (.1) Lus10015282 [exp] 260 / 2e-88 AT3G58630 140 / 3e-41 sequence-specific DNA binding transcription factors (.1) Lus10007273 [exp] 214 / 6e-68 AT3G14180 200 / 4e-62 Arabidopsis 6B-interacting protein 1-like 2, sequence-specific DNA binding transcription factors (.1) Lus10015281 [exp] 173 / 1e-54 AT3G58630 79 / 2e-18 sequence-specific DNA binding transcription factors (.1) Lus10029220 [exp] 108 / 9e-30 AT3G14180 74 / 4e-17 Arabidopsis 6B-interacting protein 1-like 2, sequence-specific DNA binding transcription factors (.1) Lus10020652 [exp] 110 / 7e-27 AT5G16860 344 / 2e-106 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013179 [exp] 108 / 1e-26 AT3G14180 256 / 5e-81 Arabidopsis 6B-interacting protein 1-like 2, sequence-specific DNA binding transcription factors (.1) Lus10008141 [exp] 105 / 6e-26 AT3G14180 271 / 3e-87 Arabidopsis 6B-interacting protein 1-like 2, sequence-specific DNA binding transcription factors (.1) Lus10028984 [exp] 79 / 3e-18 AT3G14180 86 / 7e-21 Arabidopsis 6B-interacting protein 1-like 2, sequence-specific DNA binding transcription factors (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G118600 [exp] 315 / 3e-108 AT3G58630 139 / 5e-39 sequence-specific DNA binding transcription factors (.1) Potri.001G113600 [exp] 296 / 1e-100 AT3G58630 138 / 1e-38 sequence-specific DNA binding transcription factors (.1) Potri.008G071300 [exp] 115 / 2e-30 AT5G05550 209 / 3e-67 sequence-specific DNA binding transcription factors (.1.2) Potri.001G026000 [exp] 116 / 4e-30 AT3G14180 186 / 1e-54 Arabidopsis 6B-interacting protein 1-like 2, sequence-specific DNA binding transcription factors (.1) Potri.T126206 [exp] 113 / 5e-29 AT3G14180 173 / 9e-50 Arabidopsis 6B-interacting protein 1-like 2, sequence-specific DNA binding transcription factors (.1) Potri.003G200000 [exp] 112 / 2e-28 AT3G14180 172 / 2e-49 Arabidopsis 6B-interacting protein 1-like 2, sequence-specific DNA binding transcription factors (.1) Potri.003G195300 [exp] 84 / 2e-18 AT3G54390 288 / 2e-96 sequence-specific DNA binding transcription factors (.1) Potri.001G028400 [exp] 82 / 2e-17 AT3G54390 297 / 6e-100 sequence-specific DNA binding transcription factors (.1) Potri.001G179800 [exp] 81 / 4e-17 AT3G24490 206 / 2e-63 Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1) Potri.008G027000 [exp] 81 / 4e-17 AT3G10030 457 / 2e-157 aspartate/glutamate/uridylate kinase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF10545 [flax] [poplar] MADF_DNA_bdg Alcohol dehydrogenase transcription factor Myb/SANT-like
Representative CDS sequence Show only first row Show all	>Lus10025406 pacid=23150898 polypeptide=Lus10025406 locus=Lus10025406.g ID=Lus10025406.BGIv1.0 annot-version=v1.0 ATGGGAGACCTCACCGATTCCGGCACCACCCCAAATCCCAACGCTAATTCTTCCACCTCCCGACCGATGCCAATCCGGGAAGACTGCTGGAGCGAGGAAG CAACGGCGACCTTAGTCGAAGCATGGGGGAACCGCTACCTCGAGCTCAACCGCGGAAACCTCCGCCAGAAGGACTGGAAAGACGTCGCTGATACCGTCAA TTCCATCCACGGCCTTACGAAAAAGACTTACCGCACCGACGTCCAGTGCAAGAACCGCGTTGACACTATCAAGAAAAAGTACAAGGCCGAGAAAACCCGC GTCGCCGCCTCCAACGGCGCCGTAACCTCTTCCTGGCGATTCTATGACCGATTGGATTCCCTCGTCGGAGCCAATTTCTCCGGAGCTGCTGTGTCGAAGA AACAGCAGCGTCGGGAATCTCTCTCGCCTTCGCCTCCGGTTGCGCTGCCGTTGAACAATTACCGGCGGACGACGGCAAATCCGTCGATGACGATGGCGAC ACTGCCACAGAAGAGGCCGTCGGCGGCGGGGGAGGGGTATATCAGGAGGAATTACTCGGCGGCGGCGGCTGCTGCAGCTGCGGCGGAGTCGGAGAGTGAG GAGGAGGAAGAGGAGATGGAGGAGGATGAGGAAGGGGAAGGAGTGAAGAGGTTGGGGAAGGCCATAGAGAAGTTTGGAGAAGTGTACGAGAGAGTGGAGA GTGAGAAGTTGAGGAAGATGGTGGAATTGGAGAAGCAGAGGATGAAGTTTGCTAAGGATTTGGAGATGGAGAGGATGAGGATGTTTACAGAGACTCAGAT CCAGCTGGAGAAGATCAAAAGGGGGAAGAAGAAGCAACGAACCTCTGGTGGGAATGTTGATATGTGA
AA sequence Show only first row Show all	>Lus10025406 pacid=23150898 polypeptide=Lus10025406 locus=Lus10025406.g ID=Lus10025406.BGIv1.0 annot-version=v1.0 MGDLTDSGTTPNPNANSSTSRPMPIREDCWSEEATATLVEAWGNRYLELNRGNLRQKDWKDVADTVNSIHGLTKKTYRTDVQCKNRVDTIKKKYKAEKTR VAASNGAVTSSWRFYDRLDSLVGANFSGAAVSKKQQRRESLSPSPPVALPLNNYRRTTANPSMTMATLPQKRPSAAGEGYIRRNYSAAAAAAAAAESESE EEEEEMEEDEEGEGVKRLGKAIEKFGEVYERVESEKLRKMVELEKQRMKFAKDLEMERMRMFTETQIQLEKIKRGKKKQRTSGGNVDM

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G14180	Trihelix	ASIL2	Arabidopsis 6B-interacting pr...		Lus10025406 [exp]	0	1
AT1G16210			unknown protein		Lus10022649 [exp]	1.0	0.9089
AT1G61040		VIP5	vernalization independence 5, ...		Lus10018476 [exp]	3.0	0.8862
					Lus10010972 [exp]	3.5	0.8930
AT1G30480		DRT111	DNA-DAMAGE-REPAIR/TOLERATION P...		Lus10038451 [exp]	5.0	0.8650
AT5G28040	GeBP		DNA-binding storekeeper protei...		Lus10015944 [exp]	8.0	0.8704
AT4G10810			unknown protein		Lus10023038 [exp]	9.2	0.8629
AT3G24860	Trihelix		Homeodomain-like superfamily p...		Lus10011851 [exp]	11.2	0.8577
AT1G06210			ENTH/VHS/GAT family protein (....		Lus10024896 [exp]	12.4	0.8293
AT4G13270			Late embryogenesis abundant (L...		Lus10023631 [exp]	14.8	0.8032
AT2G03690			coenzyme Q biosynthesis Coq4 f...		Lus10026673 [exp]	16.0	0.8616

Compare expression of checked genes

Lus10025406 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.