Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45890 274 / 1e-90 SAG12 senescence-associated gene 12 (.1) AT4G35350 211 / 6e-67 XCP1 xylem cysteine peptidase 1 (.1.2) AT5G43060 212 / 4e-65 Granulin repeat cysteine protease family protein (.1) AT5G50260 204 / 5e-63 CEP1 cysteine endopeptidase 1, Cysteine proteinases superfamily protein (.1) AT3G19390 205 / 1e-62 Granulin repeat cysteine protease family protein (.1) AT1G20850 200 / 1e-61 XCP2 xylem cysteine peptidase 2 (.1) AT3G48340 200 / 2e-61 CEP2 cysteine endopeptidase 2, Cysteine proteinases superfamily protein (.1) AT2G34080 199 / 2e-61 Cysteine proteinases superfamily protein (.1) AT1G47128 200 / 1e-60 RD21A, RD21 RESPONSIVE TO DEHYDRATION 21A, responsive to dehydration 21, Granulin repeat cysteine protease family protein (.1) AT3G19400 194 / 2e-60 Cysteine proteinases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015285 [exp] 424 / 5e-150 AT5G45890 406 / 8e-143 senescence-associated gene 12 (.1) Lus10025410 [exp] 395 / 6e-138 AT5G45890 382 / 2e-132 senescence-associated gene 12 (.1) Lus10015286 [exp] 390 / 5e-136 AT5G45890 393 / 7e-137 senescence-associated gene 12 (.1) Lus10020734 [exp] 264 / 1e-86 AT5G45890 390 / 4e-136 senescence-associated gene 12 (.1) Lus10028501 [exp] 261 / 1e-85 AT5G45890 391 / 2e-136 senescence-associated gene 12 (.1) Lus10006542 [exp] 256 / 9e-84 AT5G45890 391 / 2e-136 senescence-associated gene 12 (.1) Lus10003275 [exp] 256 / 2e-83 AT5G45890 392 / 1e-136 senescence-associated gene 12 (.1) Lus10032406 [exp] 255 / 3e-83 AT5G45890 391 / 2e-136 senescence-associated gene 12 (.1) Lus10020723 [exp] 254 / 4e-83 AT5G45890 398 / 3e-139 senescence-associated gene 12 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G055900 [exp] 297 / 8e-100 AT5G45890 438 / 5e-155 senescence-associated gene 12 (.1) Potri.004G056100 [exp] 286 / 2e-95 AT5G45890 419 / 2e-147 senescence-associated gene 12 (.1) Potri.004G056316 [exp] 286 / 2e-95 AT5G45890 419 / 3e-147 senescence-associated gene 12 (.1) Potri.004G056500 [exp] 285 / 6e-95 AT5G45890 417 / 2e-146 senescence-associated gene 12 (.1) Potri.004G056000 [exp] 285 / 6e-95 AT5G45890 417 / 2e-146 senescence-associated gene 12 (.1) Potri.004G056258 [exp] 285 / 6e-95 AT5G45890 417 / 8e-147 senescence-associated gene 12 (.1) Potri.004G056366 [exp] 284 / 1e-94 AT5G45890 416 / 5e-146 senescence-associated gene 12 (.1) Potri.004G056200 [exp] 284 / 2e-94 AT5G45890 420 / 1e-147 senescence-associated gene 12 (.1) Potri.005G088600 [exp] 275 / 9e-91 AT5G45890 406 / 8e-142 senescence-associated gene 12 (.1) Potri.005G089100 [exp] 273 / 2e-90 AT5G45890 405 / 1e-141 senescence-associated gene 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [flax] [poplar] Peptidase_CA PF00112 [flax] [poplar] Peptidase_C1 Papain family cysteine protease CL0125 [flax] [poplar] PF08246 [flax] [poplar] Inhibitor_I29 Cathepsin propeptide inhibitor domain (I29)
Representative CDS sequence Show only first row Show all	>Lus10025409 pacid=23150826 polypeptide=Lus10025409 locus=Lus10025409.g ID=Lus10025409.BGIv1.0 annot-version=v1.0 ATGGCAACAAATTCGAGAAGCTTGGCCATACCCATACTCCTACCCTTCGTTCTTGTCTCGATCCTAACCCTATTTCCGACCAAAACGACTTGTCGTGTGC TCACCACCGTCGATCATTTCGATGACCAATCGATGAGAGTGAGCCACGATGACTGGGCCAGAAAACACGGCAAGACGTACAGAGATTCCGCCGAGAAGGA GAGAAGATTCCTTATCTTTAAGGACAACGTCCGACGTATCGAGGAATTTAATAATAAAGACGACAGCTCGAGTTTCAGACTTGGAGTCAACAAATTTACT GACCTTACCAACGAAGAGTTCCAGTCCATGTATTTGGGTTACAAGAACAAGATGAAGTCATCGCCGAGAGGGAATGCCGCCGGCGGTGGATTCCGGTACG CGAATGTAACCGCCGTTCCGGCTGCCATGGACTGGAGAAAGTCCGGCGCCGTCACCGGAGTTAAAGACCAAGGGGCTTGTGGATGCTGTTGGGCATTTTC GGCTGTGGCGGCGATAGAAGGAGCAACGAAACTCAAAACCGGAAAGCTAGTCTCCTTGTCCGAGCAACAACTTGTCGACTGCGATGTCGACGGCGTTGAC TCGGGCTGTGAGGGAGGATTGATGGACGACGCCTTCAAATACATACTCTCCAGCAGCGGTGGCCTGACCACTGAAACCAACTACCCGTACGAAGGGGAGG ACGGGGTTTGTAACAAGCGACAGTCCACCTCCCCTGTATCCAAAATCACGGGCTATGAAGACGTGCCCGAGAATAACGAGCACGCCCTCATGCAGGCCGT GGCCCACCAGCCTGTGTCAGTGGTCATAGAAGGGGGGGGGTTCAAGTTTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGT GGGCCGCGCCGCGCCCCGCCGTCGGTTATGGCAGTGATGCCAGCGGGAAGAAGTACTGGATTTTGA
AA sequence Show only first row Show all	>Lus10025409 pacid=23150826 polypeptide=Lus10025409 locus=Lus10025409.g ID=Lus10025409.BGIv1.0 annot-version=v1.0 MATNSRSLAIPILLPFVLVSILTLFPTKTTCRVLTTVDHFDDQSMRVSHDDWARKHGKTYRDSAEKERRFLIFKDNVRRIEEFNNKDDSSSFRLGVNKFT DLTNEEFQSMYLGYKNKMKSSPRGNAAGGGFRYANVTAVPAAMDWRKSGAVTGVKDQGACGCCWAFSAVAAIEGATKLKTGKLVSLSEQQLVDCDVDGVD SGCEGGLMDDAFKYILSSSGGLTTETNYPYEGEDGVCNKRQSTSPVSKITGYEDVPENNEHALMQAVAHQPVSVVIEGGGFKFXXXXXXXXXXXXXXXXX GPRRAPPSVMAVMPAGRSTGF

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10025409 [exp]	0	1
AT1G49770	bHLH	ZOU, RGE1, bHLH...	ZHOUPI, RETARDED GROWTH OF EMB...		Lus10024812 [exp]	1.7	0.9333
					Lus10004450 [exp]	2.8	0.9161
AT5G05970		NEDD1	NEURAL PRECURSOR CELL EXPRESSE...		Lus10040260 [exp]	3.5	0.9203
AT5G42610			Protein of unknown function (D...		Lus10010793 [exp]	9.8	0.9239
AT1G68290		ENDO2 ,ENDO 2	endonuclease 2 (.1)		Lus10034336 [exp]	11.7	0.9036
AT2G20820			unknown protein		Lus10037883 [exp]	12.9	0.8754
AT2G44840	AP2_ERF	ATERF13, EREBP	ethylene-responsive element bi...		Lus10029318 [exp]	14.7	0.8885
AT4G09890			Protein of unknown function (D...		Lus10033529 [exp]	15.8	0.8865
AT1G60790		TBL2	TRICHOME BIREFRINGENCE-LIKE 2,...		Lus10030590 [exp]	17.2	0.9106
AT5G67265			unknown protein		Lus10042633 [exp]	20.6	0.8741

Compare expression of checked genes

Lus10025409 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.