Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45890 378 / 5e-131 SAG12 senescence-associated gene 12 (.1) AT2G27420 320 / 7e-108 Cysteine proteinases superfamily protein (.1) AT3G49340 316 / 2e-106 Cysteine proteinases superfamily protein (.1) AT5G43060 316 / 6e-105 Granulin repeat cysteine protease family protein (.1) AT4G36880 310 / 6e-104 CP1 cysteine proteinase1 (.1) AT5G50260 310 / 6e-104 CEP1 cysteine endopeptidase 1, Cysteine proteinases superfamily protein (.1) AT4G35350 306 / 3e-102 XCP1 xylem cysteine peptidase 1 (.1.2) AT1G47128 307 / 2e-101 RD21A, RD21 RESPONSIVE TO DEHYDRATION 21A, responsive to dehydration 21, Granulin repeat cysteine protease family protein (.1) AT3G19390 306 / 2e-101 Granulin repeat cysteine protease family protein (.1) AT3G48340 302 / 7e-101 CEP2 cysteine endopeptidase 2, Cysteine proteinases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015286 [exp] 632 / 0 AT5G45890 393 / 7e-137 senescence-associated gene 12 (.1) Lus10015285 [exp] 496 / 5e-178 AT5G45890 406 / 8e-143 senescence-associated gene 12 (.1) Lus10025409 [exp] 400 / 5e-140 AT5G45890 304 / 2e-102 senescence-associated gene 12 (.1) Lus10006542 [exp] 358 / 5e-123 AT5G45890 391 / 2e-136 senescence-associated gene 12 (.1) Lus10020723 [exp] 355 / 8e-122 AT5G45890 398 / 3e-139 senescence-associated gene 12 (.1) Lus10003275 [exp] 355 / 1e-121 AT5G45890 392 / 1e-136 senescence-associated gene 12 (.1) Lus10029799 [exp] 354 / 1e-121 AT5G45890 393 / 3e-137 senescence-associated gene 12 (.1) Lus10020722 [exp] 354 / 1e-121 AT5G45890 392 / 1e-136 senescence-associated gene 12 (.1) Lus10032406 [exp] 352 / 1e-120 AT5G45890 391 / 2e-136 senescence-associated gene 12 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G055900 [exp] 400 / 1e-139 AT5G45890 438 / 5e-155 senescence-associated gene 12 (.1) Potri.004G056500 [exp] 394 / 4e-137 AT5G45890 417 / 2e-146 senescence-associated gene 12 (.1) Potri.004G056000 [exp] 394 / 4e-137 AT5G45890 417 / 2e-146 senescence-associated gene 12 (.1) Potri.004G056100 [exp] 394 / 4e-137 AT5G45890 419 / 2e-147 senescence-associated gene 12 (.1) Potri.004G056316 [exp] 392 / 1e-136 AT5G45890 419 / 3e-147 senescence-associated gene 12 (.1) Potri.004G056258 [exp] 392 / 1e-136 AT5G45890 417 / 8e-147 senescence-associated gene 12 (.1) Potri.004G056366 [exp] 390 / 1e-135 AT5G45890 416 / 5e-146 senescence-associated gene 12 (.1) Potri.004G056200 [exp] 386 / 4e-134 AT5G45890 420 / 1e-147 senescence-associated gene 12 (.1) Potri.005G088600 [exp] 370 / 2e-127 AT5G45890 406 / 8e-142 senescence-associated gene 12 (.1) Potri.005G089100 [exp] 367 / 9e-127 AT5G45890 405 / 1e-141 senescence-associated gene 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [flax] [poplar] Peptidase_CA PF00112 [flax] [poplar] Peptidase_C1 Papain family cysteine protease CL0125 [flax] [poplar] PF08246 [flax] [poplar] Inhibitor_I29 Cathepsin propeptide inhibitor domain (I29)
Representative CDS sequence Show only first row Show all	>Lus10025410 pacid=23150861 polypeptide=Lus10025410 locus=Lus10025410.g ID=Lus10025410.BGIv1.0 annot-version=v1.0 ATGGCAACCTCAAGAACCTTGTTCATACCCATACTCCTACCCTTCATTCTCGTCTCGATCCTGACCCTATCTCCGACCAAAACGACTAGTAGCCGTATCC TCAACTCCGATCATCCAGACAACGACCAACTGATGCGGGTGAGCCATGACGATTGGGCCAGAAAACACGGCAAGACATACAATGACTCAGCCGAGAAGGA GAAACGGTTCCTTATATTTAAGGAAAACGTCCGACGTATCAAGGAATTCAACAACGAAGCAGCGAAGAACAGTTCCAGCTTCAAACTTGGAGTAAACAAA TTTACTGACCTTACCAATGAAGAGTTCCGGTCCACGTATTTAGGTTACAAGAAGATACCTTCATCTCCGAGAGAGAAATCCACCCACGGGGTAGGGTTAT GGTACGCGAATGTAACCGATGTACCTGCCGGAGTTGACTGGAGAGAGTCCGGCGCCGTCACTGATGTCAAAGACCAAGGAGGGTCTTGTGGTTGTTGTTG GGCTTTCTCGACTGTGGCGGCGATAGAAGGAGCAACGAAGCTTAAAACCGGCGAGCTAGTCTCCTTATCGGAGCAACAACTTGTCGACTGTGACGTCAAC GGCCATAACTCTGGTTGTGGAGGAGGAAACGTGGACGAGGCCTTCAAATTCCTTCTTGCCAGCAACGGTGGTCTGACCACCGAAGCCAACTACCCGTACG AGGGGGCGGACGGAGTTTGCAACGAGCAGCGGGCCTCCTCCCCTGCAGCCACAATCACGGGGTATGAGAACGTGCCCAGGAACAACGAGCACGCCCTCAT GCAGGCGGTGGCCCAACAGCCCGTGTCCGTGGCCATAGAAGGGAGTGGGTTCGCGTTCAAGCAGTATAAAAGTGGAGTGTTCAGTGGCCCATGTGGGACC CACTTGAGCCATGCCGTAACCATTGTCGGTTACGGTAGTGACGCCAACGAAGGAGAGTACTGGATTGTGAAGAATTCGTGGGGAGCTGATTGGGGAGAGA ATGGATACATGAGGATTCAGAAAGATGGCGAGTCCGAAGAAGGCATGTGTGGGTTGGCCATGGACGCTTCTTATCCCACCGTGTGA
AA sequence Show only first row Show all	>Lus10025410 pacid=23150861 polypeptide=Lus10025410 locus=Lus10025410.g ID=Lus10025410.BGIv1.0 annot-version=v1.0 MATSRTLFIPILLPFILVSILTLSPTKTTSSRILNSDHPDNDQLMRVSHDDWARKHGKTYNDSAEKEKRFLIFKENVRRIKEFNNEAAKNSSSFKLGVNK FTDLTNEEFRSTYLGYKKIPSSPREKSTHGVGLWYANVTDVPAGVDWRESGAVTDVKDQGGSCGCCWAFSTVAAIEGATKLKTGELVSLSEQQLVDCDVN GHNSGCGGGNVDEAFKFLLASNGGLTTEANYPYEGADGVCNEQRASSPAATITGYENVPRNNEHALMQAVAQQPVSVAIEGSGFAFKQYKSGVFSGPCGT HLSHAVTIVGYGSDANEGEYWIVKNSWGADWGENGYMRIQKDGESEEGMCGLAMDASYPTV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10025410 [exp]	0	1
AT5G48380		BIR1	BAK1-interacting receptor-like...		Lus10036697 [exp]	1.0	0.9707
AT3G57260		AtPR2, PR-2, PR...	PATHOGENESIS-RELATED PROTEIN 2...		Lus10027860 [exp]	2.8	0.9699
AT3G54420		ATCHITIV, CHIV,...	CHITINASE CLASS IV, homolog of...		Lus10024366 [exp]	3.9	0.9688
AT1G24140			Matrixin family protein (.1)		Lus10005605 [exp]	4.5	0.9684
AT3G07600			Heavy metal transport/detoxifi...		Lus10016063 [exp]	4.9	0.8779
AT1G24140			Matrixin family protein (.1)		Lus10039464 [exp]	5.0	0.9619
AT3G54420		ATCHITIV, CHIV,...	CHITINASE CLASS IV, homolog of...		Lus10010864 [exp]	5.5	0.9564
AT5G13490		AAC2	ADP/ATP carrier 2 (.1.2)		Lus10031843 [exp]	6.3	0.9429
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10015286 [exp]	7.0	0.9514
AT5G26340		ATSTP13, MSS1, ...	SUGAR TRANSPORT PROTEIN 13, Ma...		Lus10021924 [exp]	7.1	0.8977

Compare expression of checked genes

Lus10025410 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.