Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G25650 565 / 0 TIC55-IV, PTC52, ACD1-LIKE TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2) AT3G44880 278 / 8e-87 PAO, LLS1, ACD1 LETHAL LEAF-SPOT 1 HOMOLOG, ACCELERATED CELL DEATH 1, Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (.1) AT2G24820 171 / 9e-47 AtTic55, TIC55-II, TIC55 translocon at the inner envelope membrane of chloroplasts 55-II (.1) AT1G44446 71 / 1e-12 ATCAO, CH1 CHLOROPHYLL A OXYGENASE, Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (.1), Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (.2), Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015287 [exp] 776 / 0 AT4G25650 568 / 0.0 TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2) Lus10015283 [exp] 731 / 0 AT4G25650 621 / 0.0 TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2) Lus10025414 [exp] 699 / 0 AT4G25650 592 / 0.0 TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2) Lus10025415 [exp] 634 / 0 AT4G25650 689 / 0.0 TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2) Lus10015288 [exp] 625 / 0 AT4G25650 697 / 0.0 TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2) Lus10013915 [exp] 625 / 0 AT4G25650 619 / 0.0 TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2) Lus10015284 [exp] 606 / 0 AT4G25650 537 / 0.0 TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2) Lus10042159 [exp] 398 / 2e-125 AT5G62600 1352 / 0.0 modifier of snc1-1, 14, ARM repeat superfamily protein (.1) Lus10025413 [exp] 303 / 5e-100 AT4G25650 224 / 6e-70 TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G005900 [exp] 608 / 0 AT4G25650 731 / 0.0 TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2) Potri.003G219400 [exp] 583 / 0 AT4G25650 672 / 0.0 TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2) Potri.003G219550 [exp] 577 / 0 AT4G25650 664 / 0.0 TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2) Potri.003G219000 [exp] 568 / 0 AT4G25650 667 / 0.0 TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2) Potri.001G005700 [exp] 558 / 0 AT4G25650 634 / 0.0 TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2) Potri.003G218900 [exp] 556 / 0 AT4G25650 639 / 0.0 TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2) Potri.004G217200 [exp] 254 / 7e-78 AT3G44880 758 / 0.0 LETHAL LEAF-SPOT 1 HOMOLOG, ACCELERATED CELL DEATH 1, Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (.1) Potri.009G004100 [exp] 210 / 3e-61 AT3G44880 612 / 0.0 LETHAL LEAF-SPOT 1 HOMOLOG, ACCELERATED CELL DEATH 1, Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (.1) Potri.006G267300 [exp] 192 / 3e-54 AT2G24820 745 / 0.0 translocon at the inner envelope membrane of chloroplasts 55-II (.1) Potri.018G015700 [exp] 175 / 6e-48 AT2G24820 778 / 0.0 translocon at the inner envelope membrane of chloroplasts 55-II (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0209 [flax] [poplar] Bet_v_1_like PF08417 [flax] [poplar] PaO Pheophorbide a oxygenase CL0516 [flax] [poplar] ISP-domain PF00355 [flax] [poplar] Rieske Rieske [2Fe-2S] domain
Representative CDS sequence Show only first row Show all	>Lus10025412 pacid=23150802 polypeptide=Lus10025412 locus=Lus10025412.g ID=Lus10025412.BGIv1.0 annot-version=v1.0 ATGGAATTAGCATTCCGAACCTCTGCATTTCTCCCATCTCGAACCATCCGAAATCCACTCCTTCATCTCCATTTCTCCAAACCAAATTTGCATCTCATTC ACAGAAACACAGAACCTTCAAAATTCAAGCTTTTCTCTACCTCCTCTGTTTCGGCGGATCGTAATAACAACGATCACGTACCAGTAGTTCAACCAGAATC CATCACAGAAGAGAACACTACGAACGGTAAGTTCGACTGGTACGCTCAGTGGTACCCGTTGTCCCCGGAGGTTGACCTGGACAAGAAGGTCCCGCATGCC AGGAAGGTGTTGGGGATCGATGTCGTAGTGTGGTGGGACCAAAACGAGAATGCATGGAAGGTGTTCGACGACATGTGCCCTCATCGGTTGGCTCCCCTGT CTGAAGGGAGGATTGACGGGAGTGGGAGATTGCAATGCGTTTACCACGGCTGGTGTTTCGATGGCTCCGGTAGCTGCAAGCTCATCCCTCAGGCTCCTGC CGATGGCCCTTCGGTTCACACCAACAAAAGGGCTTGCGTCGCAAGTTATCCAACCATAGTGCATCACGACATTGTGTGGTTTTGGGCGAACTCCGACCCT CAATACCGAAACATATTTGAGACCAGGAAACCTCCGTTCCTTCCGGAACTCGATGACCCTTCGTTCACGAAGGTGTTAGGGATTCGAGATTTTCCATACG GGTATGAAGTGTTGATGGAAAATCTTATGGATCCTGCTCATGTTCCCTACTCGCATTCCGGTTTGGTACTAACACACCCGCCCAAGGTACAAGTTGACAA AGAAGGCGGGAGACCGCTAGAATTTACAGTAAACGGAATAAGGATGGATGGATATGATGCAGATGTGGAGTACGGTTACGGTATATTTGCAGCACCCTGC GTTTTCTCTATCCATGCTCATGACATGAAAGTCGTGACGAAGAAGACACCTGGCAGGACGGCATTCATTTTCATGTGCATTCCAGTGAGTCCAGACAGCA CCAGATTGATATGGTGCTTCCCGAGGAATTTCGACATATGGATCGACAAAGTTGTACCGAGATGGTTCTTCCATCTCAGTCTCAACTTGGTTTTCGATTC TGATTTACATCTTCTTCGCGAGGCAGAGCAGAGAATCAAGGGGATCGGGGGAAATCCGAACTGGCAGAAGGCTTGTTTCGTTCCAACCAAGTCAGATGCT TTAGTGGTCGGGTTTCGAAGATGGTTGAACCAGTATGGTGGCGGTGAAGTCGACTGGAGAGGCAAGTACAGGGCTCGTACTCCAGCTCCGGCTCCCCCAC GGGAACAATTTATGGACAGGTACTGGAGTCATGTGGTAACCTGCAGCAGTTGCAACGGCGCGTACAAGAAGTTCAAAGTGCTCGAGGCCTTTCTGATGTT CCTGTCCGTCGGATTAATCGCGACCGTTGCTGCAACCAAGGAAGGGATGATGTTTGCTGGTTTGAGAACTCGAATGGCGGTAATGGCGATGGTATGTTTC GCAGCCTCGAGGTGGTTGACTCGTTTCATCGACACCAACTTCCGGTTCCATGACTACAACCACACGTCTCCTCCGAAGTCGAATTTCAATCTAAGTAAGC TCGTCGGCGTTGCGGTGTAG
AA sequence Show only first row Show all	>Lus10025412 pacid=23150802 polypeptide=Lus10025412 locus=Lus10025412.g ID=Lus10025412.BGIv1.0 annot-version=v1.0 MELAFRTSAFLPSRTIRNPLLHLHFSKPNLHLIHRNTEPSKFKLFSTSSVSADRNNNDHVPVVQPESITEENTTNGKFDWYAQWYPLSPEVDLDKKVPHA RKVLGIDVVVWWDQNENAWKVFDDMCPHRLAPLSEGRIDGSGRLQCVYHGWCFDGSGSCKLIPQAPADGPSVHTNKRACVASYPTIVHHDIVWFWANSDP QYRNIFETRKPPFLPELDDPSFTKVLGIRDFPYGYEVLMENLMDPAHVPYSHSGLVLTHPPKVQVDKEGGRPLEFTVNGIRMDGYDADVEYGYGIFAAPC VFSIHAHDMKVVTKKTPGRTAFIFMCIPVSPDSTRLIWCFPRNFDIWIDKVVPRWFFHLSLNLVFDSDLHLLREAEQRIKGIGGNPNWQKACFVPTKSDA LVVGFRRWLNQYGGGEVDWRGKYRARTPAPAPPREQFMDRYWSHVVTCSSCNGAYKKFKVLEAFLMFLSVGLIATVAATKEGMMFAGLRTRMAVMAMVCF AASRWLTRFIDTNFRFHDYNHTSPPKSNFNLSKLVGVAV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G25650		TIC55-IV, PTC52...	TRANSLOCON AT THE INNER ENVELO...		Lus10025412 [exp]	0	1
AT5G05340			Peroxidase superfamily protein...		Lus10009934 [exp]	1.4	0.9198
AT1G75540	CO	LHUS, AtBBX21, ...	long hypocotyl under shade, B-...		Lus10028791 [exp]	2.0	0.9162
AT2G33810	SBP	SPL3	squamosa promoter binding prot...		Lus10015421 [exp]	3.0	0.9075
AT5G27600		LACS7, ATLACS7	long-chain acyl-CoA synthetase...		Lus10010530 [exp]	4.5	0.8900
AT5G05340			Peroxidase superfamily protein...		Lus10009933 [exp]	4.5	0.9069
AT5G04770		CAT6, ATCAT6	ARABIDOPSIS THALIANA CATIONIC ...		Lus10040142 [exp]	5.7	0.8139
AT1G08140		ATCHX6a	cation/H+ exchanger 6A, cation...		Lus10009077 [exp]	6.5	0.7973
AT5G50890			alpha/beta-Hydrolases superfam...		Lus10001506 [exp]	7.9	0.8799
AT3G01470	HD	HD-ZIP-1, HAT5,...	HOMEODOMAIN PROTEIN FROM ARABI...		Lus10036674 [exp]	9.2	0.8893
					Lus10041943 [exp]	9.4	0.8807

Compare expression of checked genes

Lus10025412 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.