Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G25650 224 / 4e-70 TIC55-IV, PTC52, ACD1-LIKE TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2) AT3G44880 66 / 3e-12 PAO, LLS1, ACD1 LETHAL LEAF-SPOT 1 HOMOLOG, ACCELERATED CELL DEATH 1, Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015287 [exp] 386 / 7e-133 AT4G25650 568 / 0.0 TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2) Lus10025412 [exp] 306 / 9e-102 AT4G25650 574 / 0.0 TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2) Lus10015283 [exp] 281 / 1e-91 AT4G25650 621 / 0.0 TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2) Lus10025414 [exp] 266 / 8e-86 AT4G25650 592 / 0.0 TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2) Lus10015288 [exp] 254 / 2e-81 AT4G25650 697 / 0.0 TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2) Lus10015284 [exp] 254 / 2e-81 AT4G25650 537 / 0.0 TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2) Lus10025415 [exp] 251 / 2e-80 AT4G25650 689 / 0.0 TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2) Lus10013915 [exp] 246 / 9e-79 AT4G25650 619 / 0.0 TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2) Lus10042159 [exp] 203 / 2e-59 AT5G62600 1352 / 0.0 modifier of snc1-1, 14, ARM repeat superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G005900 [exp] 242 / 9e-77 AT4G25650 731 / 0.0 TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2) Potri.003G219550 [exp] 224 / 7e-70 AT4G25650 664 / 0.0 TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2) Potri.003G219400 [exp] 221 / 1e-68 AT4G25650 672 / 0.0 TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2) Potri.003G218900 [exp] 219 / 7e-68 AT4G25650 639 / 0.0 TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2) Potri.001G005700 [exp] 204 / 3e-62 AT4G25650 634 / 0.0 TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2) Potri.003G219000 [exp] 202 / 8e-62 AT4G25650 667 / 0.0 TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2) Potri.004G217200 [exp] 66 / 4e-12 AT3G44880 758 / 0.0 LETHAL LEAF-SPOT 1 HOMOLOG, ACCELERATED CELL DEATH 1, Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (.1) Potri.009G004100 [exp] 50 / 6e-07 AT3G44880 612 / 0.0 LETHAL LEAF-SPOT 1 HOMOLOG, ACCELERATED CELL DEATH 1, Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (.1) Potri.006G267300 [exp] 44 / 6e-05 AT2G24820 745 / 0.0 translocon at the inner envelope membrane of chloroplasts 55-II (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0209 [flax] [poplar] Bet_v_1_like PF08417 [flax] [poplar] PaO Pheophorbide a oxygenase
Representative CDS sequence Show only first row Show all	>Lus10025413 pacid=23150848 polypeptide=Lus10025413 locus=Lus10025413.g ID=Lus10025413.BGIv1.0 annot-version=v1.0 ATGTGTATATCATTGGTGGTGCTTCCATGGCTCAGGGAGATGCAAGCTCGTCCCTCGGTTTCCGTTAGGGGTCCTCCAGTTCACGCCAACAAAAGGGCTT GTGTGGCCGCTTACCCTACCATATTACAACATGGCATTGTGTGGTTTTGGCCGAATTCGGATTCGAAATACAAGGACATTTTCGAGACGAAGAAGCCTCC TTTCATTCCTGAAATGGATGATCCTTCCTTTACCAAGATGCTTGGCGTCCGAGATTTCCCTTTCGGTGTTGATGGAAAACGTGATGGACCCTGGTCATGT TCCTACTTGCATTTCGATTTGGTCTTAACACAACCACCCAAAGTAAAGCTTGACAGAGAAGGTGGGAGGCCATTGGAAATCACCGTTAACGGAGTAGAGA TGGATGGATATGACGCAAGCTTGGAGTACGGCCACGGTATACTCGCAGCACCGTGCATTTTCTCGATTCACGCTCATGGCATGGCTGTCGCGGCCACAAA GGTAACACAGATAGAAAAACCTGAGAGGACAGCGTTCGTGTTCCTTTGTATTCCGGTTAGTCCGGCCAACATCAGATTTATCTGGGCATTCCCAAGGGAC TTTAGTTTGTGGGTTAACCAAGTTGTACCGAGGTGGTTCTTCCACCTTGGACTCAACTTGGTTTTCGATTCGGATTTGCATCTTCTTCACGTTGAGTTGA CCAAATGTGGCGGCGGTGGAGTTGATTGGAGAGGCAAGTATGCTACTCAAGCCGATCTTCCTACAACTCCCCAAGGGAACAATTAA
AA sequence Show only first row Show all	>Lus10025413 pacid=23150848 polypeptide=Lus10025413 locus=Lus10025413.g ID=Lus10025413.BGIv1.0 annot-version=v1.0 MCISLVVLPWLREMQARPSVSVRGPPVHANKRACVAAYPTILQHGIVWFWPNSDSKYKDIFETKKPPFIPEMDDPSFTKMLGVRDFPFGVDGKRDGPWSC SYLHFDLVLTQPPKVKLDREGGRPLEITVNGVEMDGYDASLEYGHGILAAPCIFSIHAHGMAVAATKVTQIEKPERTAFVFLCIPVSPANIRFIWAFPRD FSLWVNQVVPRWFFHLGLNLVFDSDLHLLHVELTKCGGGGVDWRGKYATQADLPTTPQGNN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G25650		TIC55-IV, PTC52...	TRANSLOCON AT THE INNER ENVELO...		Lus10025413 [exp]	0	1
AT5G24860		ATFPF1, FPF1	ARABIDOPSIS FLOWERING PROMOTIN...		Lus10037510 [exp]	1.0	0.9167
					Lus10018970 [exp]	3.5	0.8952
					Lus10041941 [exp]	5.7	0.8909
AT2G39440			unknown protein		Lus10040607 [exp]	8.0	0.9021
AT3G14460			LRR and NB-ARC domains-contain...		Lus10039577 [exp]	9.8	0.8785
AT1G48320			Thioesterase superfamily prote...		Lus10036869 [exp]	10.0	0.8729
AT1G13110		CYP71B7	"cytochrome P450, family 71 su...		Lus10042815 [exp]	10.0	0.8433
					Lus10015488 [exp]	10.2	0.8869
AT5G06800	GARP		myb-like HTH transcriptional r...		Lus10023816 [exp]	11.5	0.8848
AT5G06540			Pentatricopeptide repeat (PPR)...		Lus10031424 [exp]	14.5	0.8504

Compare expression of checked genes

Lus10025413 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.