Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45900 944 / 0 ATAPG7, ATG7, APG7, ATATG7 AUTOPHAGY-RELATED 7, AUTOPHAGY 7, ThiF family protein (.1) AT5G19180 45 / 0.0002 ECR1 E1 C-terminal related 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015289 [exp] 1290 / 0 AT5G45900 978 / 0.0 AUTOPHAGY-RELATED 7, AUTOPHAGY 7, ThiF family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G055600 [exp] 993 / 0 AT5G45900 986 / 0.0 AUTOPHAGY-RELATED 7, AUTOPHAGY 7, ThiF family protein (.1) Potri.011G065402 [exp] 122 / 1e-32 AT5G45900 123 / 8e-34 AUTOPHAGY-RELATED 7, AUTOPHAGY 7, ThiF family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00899 [flax] [poplar] ThiF ThiF family
Representative CDS sequence Show only first row Show all	>Lus10025416 pacid=23150904 polypeptide=Lus10025416 locus=Lus10025416.g ID=Lus10025416.BGIv1.0 annot-version=v1.0 ATGTCTACTGAAGGTTCCATCCTGCAATTCGCACCTTTCCGGAGCTCCGTCGATGAAGGTTTCTGGCACAGATTGTCTTCCTTGAAGCTCAACAAGTTCC GCATAGACGATTCTCCCATACCCATCTCTGCGTTCTATGCACCGTGTTCACATTTGCAAGTGTCGAATCACTTGACTCTCGTTACTGAATCTCTACCTAG TGATGAAGATGAACAATCTCAAGTTGCTACTGGAAACAGGAATAGATGTTCCGTGCCTGGAATTCTGTATAATACCAATACATTGGAAGATTTTCGTGCT CTGGATAAAAAGGCTTTGATCAAGGAAGAAGCTAAGAAGATTTGGGAAGATATTCGAAGCGGAAAGGCGATGGAGGACTGTGCGGTGCTATCTCGGTTTC TCGTTATCTCGTTCGCCGATCTGAAGAAATGGAGCTTCCATTACTGGTTTGCTTTCCCTGCATTGGTTCTTGATCCTCCTGCGAAGGTAGTTGAGTTGAA ACCTGCTTCTCAGTGGCTTACACCAGATGAGGCTGAATCTGTGTCGAAGGCTTGTAATGAATGGCGTAGCTCAAACACCACCACAGGTGTGCCATTTTTC TTGGTCTCGATTGCTTCTGATTCTTCTGCCACTATTCGGCATTTAAAGGACTGGGAAGCTTGTCAAGGTGATGGTCAAAAGGTTCTATTCGGATTTTACG ACCCTTGTCATCTTCCGAGCAACCCTGGTTGGCCTTTCCGTAATCTCCTGGCCTTGATTTGTTCGAGGTGGAATCTAAAGTCTGTCGACTTCTTCTGCTA CAGAGAGACTCGTGGTTTCGCAGATTTGGGATTGTCCCTCGCTGGCAAAGTCGTCGTTCATGGTTCTTCTTCCACAAGGTTAGACGGCTGTAATTCAGTA ACTGCTCTAGTCATCATCATATTTCCGTTGTCAAGTTCGATTTCGCCTGATGAGAATCTAAATTCGCCCTATCTTATCCGTAGGGATAATCAAGATGTAC CGAGTGCAGTAGGTTGGGAACTTAGCAAGGGTAGAGCTGTTCCTAGATGTGTTACGCTAGCTAAATCAATGGATCCAACAAGGCTGGCTATATCTGCGGC CGATTTGAATCTGAAACTAATGCGCTGGCGTGCTCTTCCTTCGCTCGACCTAGATAAGTTGGCTTCCACAAAATGCCTTCTCTTAGGAGCAGGTACACTC GGCTGCCAGGTTGCTCGCATGCTCATGGCTTGGGGCGTACGGAAAATTACACTACTCGATAACGGAAGGGTGGCTATGTCTAACCCGCTGAGGCAGTCAC TGTATACATTCGACGACTGCCTTGACGGAGGCGATTATAAAGCTTTGGCAGCGGTTAAAAGCCTCCAGCGGATTTTTCCAGCCATTGAGGCCGAAAGTGT TGTCATGGCGATACCGATGCCTGGGCATCCGGTCACTAGCCAAGAAGTGGACGGAGTAATCGATGATTGCACACGTCTACGTGACTTGATTGATTCTCAT GATGCTGTCTTCTTGTTGACCGATACGAGAGAGAGCAGATGGCTTCCGAGCCTTCTTTGTGCAAATGCTAACAAGATTACCATAACTGCAGCCCTAGGGT TCGATAGCTTCCTCGTAATGCGGCATGGATCCGGCCCTCTTCCCAATGCTGCAGATTCTCTCCCAGACTCGATGGGGAATCTCGCTCTAGCCGATAGAGA ACAGGAGAGACTGGGCTGTTACTTCTGCAACGACGTCGTGCAACCTACCGATTCGACATCGAATCGGACTTTGGACCAACAGTGCACAGTTACACGCCCG GGAATCGCCCCGATCGCCTCTTCCCTTGCTGTCGAACTTTTCGTCAACATCCTGCACCACCCCGACGGACTACACGCTCGCGCTAATCCTGCTGATTCGA GCAACAGCGGAGGAAGCAACGAGCTGCCTCTCGGCCTCATACCACACCAGATTAGAGGCTACCTCTATCACTTTTCGCAGATGAGCCTCGTAGGCCGCTC CTTCGATAGGTGCACCGCTTGTTGCTCGACAGTTGTGTCGGAGTTTCGCGAAAGGAAGATGGAGTTCCTTCTTGAGGCGATCAATCATCCGACCTACTTG GCCGATCTCACTGGACTGACCGAGCTAACGAATGCAGCCAGCTCGTTCGATGTGGATTGGGACGAGGAGGATGTTGGCGGGGACGATGAGTTTGGTGAAA TGTGA
AA sequence Show only first row Show all	>Lus10025416 pacid=23150904 polypeptide=Lus10025416 locus=Lus10025416.g ID=Lus10025416.BGIv1.0 annot-version=v1.0 MSTEGSILQFAPFRSSVDEGFWHRLSSLKLNKFRIDDSPIPISAFYAPCSHLQVSNHLTLVTESLPSDEDEQSQVATGNRNRCSVPGILYNTNTLEDFRA LDKKALIKEEAKKIWEDIRSGKAMEDCAVLSRFLVISFADLKKWSFHYWFAFPALVLDPPAKVVELKPASQWLTPDEAESVSKACNEWRSSNTTTGVPFF LVSIASDSSATIRHLKDWEACQGDGQKVLFGFYDPCHLPSNPGWPFRNLLALICSRWNLKSVDFFCYRETRGFADLGLSLAGKVVVHGSSSTRLDGCNSV TALVIIIFPLSSSISPDENLNSPYLIRRDNQDVPSAVGWELSKGRAVPRCVTLAKSMDPTRLAISAADLNLKLMRWRALPSLDLDKLASTKCLLLGAGTL GCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTFDDCLDGGDYKALAAVKSLQRIFPAIEAESVVMAIPMPGHPVTSQEVDGVIDDCTRLRDLIDSH DAVFLLTDTRESRWLPSLLCANANKITITAALGFDSFLVMRHGSGPLPNAADSLPDSMGNLALADREQERLGCYFCNDVVQPTDSTSNRTLDQQCTVTRP GIAPIASSLAVELFVNILHHPDGLHARANPADSSNSGGSNELPLGLIPHQIRGYLYHFSQMSLVGRSFDRCTACCSTVVSEFRERKMEFLLEAINHPTYL ADLTGLTELTNAASSFDVDWDEEDVGGDDEFGEM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G45900		ATAPG7, ATG7, A...	AUTOPHAGY-RELATED 7, AUTOPHAGY...		Lus10025416 [exp]	0	1
AT5G45900		ATAPG7, ATG7, A...	AUTOPHAGY-RELATED 7, AUTOPHAGY...		Lus10015289 [exp]	2.0	0.8596
AT4G40050			Protein of unknown function (D...		Lus10012756 [exp]	2.2	0.8838
AT5G47430			DWNN domain, a CCHC-type zinc ...		Lus10004741 [exp]	4.6	0.8513
AT4G11740		SAY1	Ubiquitin-like superfamily pro...		Lus10029591 [exp]	9.0	0.8745
AT4G26750		EXT-like	extensin-like, hydroxyproline-...		Lus10033994 [exp]	15.0	0.8507
AT1G21380			Target of Myb protein 1 (.1)		Lus10029739 [exp]	17.3	0.8834
AT5G47430			DWNN domain, a CCHC-type zinc ...		Lus10007803 [exp]	18.8	0.8402
AT1G21380			Target of Myb protein 1 (.1)		Lus10042770 [exp]	28.1	0.8266
AT3G52990			Pyruvate kinase family protein...		Lus10008644 [exp]	31.3	0.8524
AT4G39910		ATUBP3	ubiquitin-specific protease 3 ...		Lus10024043 [exp]	43.1	0.8388

Compare expression of checked genes

Lus10025416 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.