Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G15010 276 / 1e-89 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT2G41060 187 / 6e-55 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT3G56860 182 / 1e-52 UBA2A UBP1-associated protein 2A (.1.2.3.4.5) AT2G22090 111 / 2e-27 UBA1A RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT2G19380 96 / 2e-21 RNA recognition motif (RRM)-containing protein (.1) AT2G22100 88 / 7e-19 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT5G50250 76 / 3e-15 CP31B chloroplast RNA-binding protein 31B (.1) AT1G76460 75 / 4e-15 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G20880 74 / 1e-14 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT4G24770 73 / 4e-14 CP31, ATRBP33, ATRBP31, RBP31 ARABIDOPSIS THALIANA RNA BINDING PROTEIN, APPROXIMATELY 31 KD, 31-kDa RNA binding protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015290 [exp] 491 / 9e-174 AT3G15010 335 / 2e-112 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10032516 [exp] 196 / 3e-58 AT3G56860 405 / 6e-139 UBP1-associated protein 2A (.1.2.3.4.5) Lus10043016 [exp] 192 / 2e-56 AT3G56860 463 / 1e-160 UBP1-associated protein 2A (.1.2.3.4.5) Lus10023817 [exp] 185 / 1e-54 AT3G15010 188 / 5e-56 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10021035 [exp] 172 / 7e-48 AT3G15010 182 / 4e-51 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10030202 [exp] 76 / 4e-15 AT2G46780 224 / 2e-71 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10002684 [exp] 76 / 4e-15 AT2G46780 228 / 1e-72 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10041952 [exp] 76 / 7e-15 AT5G50250 272 / 2e-90 chloroplast RNA-binding protein 31B (.1) Lus10017962 [exp] 74 / 2e-14 AT5G50250 274 / 5e-92 chloroplast RNA-binding protein 31B (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G065200 [exp] 333 / 4e-112 AT3G15010 295 / 1e-97 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.004G055400 [exp] 331 / 3e-111 AT3G15010 303 / 2e-100 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.001G377400 [exp] 282 / 2e-91 AT3G15010 342 / 2e-114 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.016G023800 [exp] 196 / 4e-58 AT3G56860 348 / 1e-115 UBP1-associated protein 2A (.1.2.3.4.5) Potri.006G025600 [exp] 196 / 6e-58 AT3G56860 353 / 2e-117 UBP1-associated protein 2A (.1.2.3.4.5) Potri.005G081600 [exp] 184 / 3e-54 AT2G41060 213 / 8e-65 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.001G220600 [exp] 185 / 1e-53 AT3G56860 232 / 1e-70 UBP1-associated protein 2A (.1.2.3.4.5) Potri.006G190900 [exp] 181 / 1e-53 AT3G15010 179 / 6e-53 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.016G048100 [exp] 172 / 3e-50 AT3G15010 181 / 1e-53 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.002G179100 [exp] 76 / 3e-15 AT2G46780 275 / 2e-91 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10025418 pacid=23150804 polypeptide=Lus10025418 locus=Lus10025418.g ID=Lus10025418.BGIv1.0 annot-version=v1.0 ATGGATTTCTCCAAGAAGCGCAAGGTCGACGAATTCGGCGTCGCATCATCCCCAGACGGCTCATCCGCCGCCGCCGTCACCACAAACAACTCCTCCGCCG CCGCAGCATCCTCCCTAACACCCGAAGACATCCGCAAGATCATCGAGCCGTTCACCAAGGACCAGCTGCTCGACATCCTCCAGACAGCCGCCGTGCACCA CTCCGACGTCCTCGACGCAATCCGCTCCCTCGCCGACAGCGACGTCACCCTGCGGAAGCTCTTCATCCGAGGACTCTCGTCGGAGACCACGACGGAGACT CTCCGGACACTCTTCACCGCCTTCGGCGAGCTGGAGGAGGCGATAGTGATACTGGATAAGAACACTGGTAAATCGAAGGGGTATGGATTCATTACTTTCA AGCATATTGATGGAGCGAGGATGGCGCTGAAGGAGCCGAGTAAGAAGATTGACGGGAGGATGACGGTGACGCAGTTGGCGTCTGCTGGCCAGTCGAATTC CGGCGGAGGTGGTGGTGTTGATGTTTCGTTGAGGAAGATTTATGTTGGTAATGTGCCGTACGATATTCCTTCTGAGAGGTTGTTGGCGTTTTTCTCAATG TATGGGGAGATTGAGGAAGGGCCGTTGGGGTTTGATAAGTCTTCGGGTAAAGCGAAGGGGTTCGCGTTTATGATTTACAAGACTGAGGAAGGTGCTAGGG CGGCGATTGCTGAGCCGATGAAGAATATTAATGGATTTCAAGTGATTTGTAAACTTGCAGCTGATAATAAGAAAGGGAAGCCTCAGGGAGCTGATGGTTC CCAGATTCAGGGGAACTTACAGCAGCCGTCGATGCAGCATCAGCAGCAGCAACCGCAGGGTTATGGAGCTGGCTCAATGCCTCCGTATGGAGGGTTTTCT GGCGGGATGAATAATAGTGGGTATGGAATGAATCCGGCTATGCCTGGAGCGATGGGGAATGGTGGCTATGGTGGGTATGGCGGGGTTTCGCAGTATGGGG GACCTGGTTCGGGAGATTACGGGTTGAATAATGCAGGAGGTGCGATGTTCCGTCCTCCTCCTGGCTCTGCTGGTGCTGGTTCGGCAGGATATCCGGATAG TGGACCTTATGGGATGCCTCAGCAACACCAGCCTCCAACTATGGCTCCTAGAATTCCTCCGGGTGGGATGTATCCAGGTGGACCACCTTACTACTGA
AA sequence Show only first row Show all	>Lus10025418 pacid=23150804 polypeptide=Lus10025418 locus=Lus10025418.g ID=Lus10025418.BGIv1.0 annot-version=v1.0 MDFSKKRKVDEFGVASSPDGSSAAAVTTNNSSAAAASSLTPEDIRKIIEPFTKDQLLDILQTAAVHHSDVLDAIRSLADSDVTLRKLFIRGLSSETTTET LRTLFTAFGELEEAIVILDKNTGKSKGYGFITFKHIDGARMALKEPSKKIDGRMTVTQLASAGQSNSGGGGGVDVSLRKIYVGNVPYDIPSERLLAFFSM YGEIEEGPLGFDKSSGKAKGFAFMIYKTEEGARAAIAEPMKNINGFQVICKLAADNKKGKPQGADGSQIQGNLQQPSMQHQQQQPQGYGAGSMPPYGGFS GGMNNSGYGMNPAMPGAMGNGGYGGYGGVSQYGGPGSGDYGLNNAGGAMFRPPPGSAGAGSAGYPDSGPYGMPQQHQPPTMAPRIPPGGMYPGGPPYY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G15010			RNA-binding (RRM/RBD/RNP motif...		Lus10025418 [exp]	0	1
AT3G15010			RNA-binding (RRM/RBD/RNP motif...		Lus10015290 [exp]	2.2	0.9126
AT3G22980			Ribosomal protein S5/Elongatio...		Lus10004749 [exp]	2.8	0.8740
AT5G16420			Pentatricopeptide repeat (PPR-...		Lus10030222 [exp]	4.5	0.8795
AT2G17670			Tetratricopeptide repeat (TPR)...		Lus10041832 [exp]	4.9	0.8905
AT4G21705			Tetratricopeptide repeat (TPR)...		Lus10005855 [exp]	9.2	0.8761
AT3G02490			Pentatricopeptide repeat (PPR)...		Lus10032092 [exp]	13.1	0.8843
AT1G09620			ATP binding;leucine-tRNA ligas...		Lus10024704 [exp]	14.9	0.8849
AT4G26430		CSN6B	COP9 signalosome subunit 6B (....		Lus10025606 [exp]	15.6	0.7982
AT4G20980			Eukaryotic translation initiat...		Lus10011171 [exp]	17.3	0.8749
AT2G17670			Tetratricopeptide repeat (TPR)...		Lus10028379 [exp]	19.0	0.8723

Compare expression of checked genes

Lus10025418 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.