Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G18570 407 / 2e-134 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G25690 319 / 4e-98 AtCHUP1, CHUP1 Arabidopsis thaliana CHLOROPLAST UNUSUAL POSITIONING 1, Hydroxyproline-rich glycoprotein family protein (.1.2.3) AT1G07120 261 / 3e-81 unknown protein AT1G48280 254 / 1e-76 hydroxyproline-rich glycoprotein family protein (.1) AT4G04980 63 / 6e-10 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015292 [exp] 811 / 0 AT4G18570 568 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10000986 [exp] 468 / 9e-159 AT4G18570 501 / 1e-171 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013931 [exp] 373 / 4e-122 AT4G18570 321 / 5e-102 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10034382 [exp] 319 / 4e-97 AT3G25690 1221 / 0.0 Arabidopsis thaliana CHLOROPLAST UNUSUAL POSITIONING 1, Hydroxyproline-rich glycoprotein family protein (.1.2.3) Lus10034264 [exp] 318 / 9e-97 AT3G25690 1230 / 0.0 Arabidopsis thaliana CHLOROPLAST UNUSUAL POSITIONING 1, Hydroxyproline-rich glycoprotein family protein (.1.2.3) Lus10031863 [exp] 267 / 4e-83 AT1G07120 393 / 2e-135 unknown protein Lus10031293 [exp] 166 / 6e-46 AT1G07120 267 / 3e-87 unknown protein Lus10038307 [exp] 87 / 2e-17 AT1G11070 330 / 2e-99 unknown protein Lus10018473 [exp] 81 / 2e-15 AT4G04980 347 / 1e-104 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G054900 [exp] 432 / 2e-144 AT4G18570 420 / 1e-139 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.011G064500 [exp] 408 / 5e-135 AT4G18570 432 / 2e-144 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.011G156500 [exp] 337 / 1e-105 AT3G25690 338 / 2e-103 Arabidopsis thaliana CHLOROPLAST UNUSUAL POSITIONING 1, Hydroxyproline-rich glycoprotein family protein (.1.2.3) Potri.001G460300 [exp] 329 / 1e-102 AT3G25690 345 / 3e-106 Arabidopsis thaliana CHLOROPLAST UNUSUAL POSITIONING 1, Hydroxyproline-rich glycoprotein family protein (.1.2.3) Potri.010G130800 [exp] 330 / 3e-101 AT3G25690 1030 / 0.0 Arabidopsis thaliana CHLOROPLAST UNUSUAL POSITIONING 1, Hydroxyproline-rich glycoprotein family protein (.1.2.3) Potri.001G279000 [exp] 303 / 1e-96 AT1G07120 440 / 2e-153 unknown protein Potri.009G073600 [exp] 298 / 6e-95 AT1G07120 434 / 4e-151 unknown protein Potri.010G003100 [exp] 267 / 2e-81 AT1G48280 356 / 2e-116 hydroxyproline-rich glycoprotein family protein (.1) Potri.011G047100 [exp] 72 / 6e-13 AT4G04980 358 / 1e-109 unknown protein Potri.004G038400 [exp] 68 / 1e-11 AT4G04980 387 / 4e-121 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10025419 pacid=23150871 polypeptide=Lus10025419 locus=Lus10025419.g ID=Lus10025419.BGIv1.0 annot-version=v1.0 ATGGTGGCAGGAAAAGTCAGAGCAGTTATGGGTCTCCAGAAGCCGCCGCCGCCCAAGCCTCCCAGTATTCCTGCTCCTTCTGGCACCGCCGCTAGCAATC CTTCATCCAAGACAGTGTTCTCGCGTTCCTTTGGCGTCTACTTCCCGCGCTCCTCCTCGCAGGTCCAGCCCCGTCCTCCCGACGTCACTGACCTCCTCCG CTTAGTCGAGGAGCTCCGGGAGCGGGAGTCGAGGCTGAGGACCGAGCTACTCGAGTTCAAGCTGCTGAGAGAGTCTGCCGCGATCGTGCCGAAGCTGGAG GCGGATATTTCGGCGAAGAATGCGGAGATGGAAACGGCTAGGAGAAGGATTGCGGAGATGGAAGAGAGGGAGAAGAAGTTTGAACAGATTGAGGATGAGA TTCGTGAGCTGGGGAAAACGGCGACGGAGAAGGATGAGAAGTGTAAAGAGATGGAGGTGGAGATTCGGGAGCTGAGGAAAATAGCGTCGGAGAAGGATGA GAAGTTTAGGGGAATGGAGGAGGAGATTCGGGAGCTGAGGAGAGTTGCGTCGGAGAAGGATGAGGTTCAGGAGCAGAGGTTTCGGGGTTTGATGGAGGTG ACTATGAAGTCGAATCTGATTAGGAATTTAAGGAGAGGAGGTAACAAGTATTTGCCGGAGAACGGTTCGTCTAGGCCGGAAAATGCAGATGTAGTTATGA AGAGAGACGAAACGGAAAACGAAGGGACGAGTCAGTTGACGAGGTGTGACTCGGAGGAACTCTCTGAATCGTCGACCTTATTGCCTAATGTCAGATCTCG CTGTCCTAGGGTGCCGAAGCCTCCTCCGCCGAAACGGCCTTCGTCGTCGTCTTGTTTCTCCGATCAATCTGCTTCTGTAAATGTTTCAGCACCTCCACCG CCGCCTCCCCTGCCTCCAATGATGGCGTCAACCAAACCGGCGCCAGCTGCTCTCCTGCCGCCTCCACCACCTCCTCCTCCTCCGCCGAAGGAACGCAGAG CGGGAACGGCGAAGGTGAGACGAGTCCCTGAAGTTGTGGAGTTCTACCATTCGCTGATGAGGAGGGACTCGAGGAAGGAATCCGCCGCCGGGGCGGCTGA TTCCGCCGCTGCCACCGCCAATTCCCGCGACATGATCGGCGAAATCGAGAATCGATCAGCCTATTTACTTGCTATAAAAACGGACGTGGAAACGCAGGGA GAGTTCATAAGGTTCTTAATCAAAGAAGTGCAGAATGCTGCGTTCTCAGACATTGAAGATGTAGTCCCTTTCGTTAAATGGCTGGACGATGAGCTATCCT ATCTGGTGGATGAAAGGGCGGTGCTGAAGCATTTCAAATGGCCAGAGCAGAAGGCCGATGCAATGAGGGAAGCAGCATTCGGGTACTGTGATCTGAAGAA AGTAGAATCGGAAGCATCTTCTTTCCGAGACGTTGCTCGCCAGCCATGCACTTCAGCTCTCAAGAAAATGCAGGCTCTGGTTGAAAAGTTAGAGCACGGG GTGTACAGTTTGTCAAGAATGAGGGAATCAGCGATGAAACGGTACAAGGAGTATGGGATTCCGATCAATTGGATGCTTGAAACAGGCCTTGTTACCCAGA TCAAATTGGCATCGGTTAAACTAGCCATGAAGTACATGAAGCGGGTCTCGGCAGAGCTGGAGTCCGTCGATAGTCCCTCGGATGAAGAGGACCTCGTCGT CCAAGGCGTTCGTTTCGCTTTTCGGGTCCATCAGTTTGCGGGAGGATTCGACGGGGAAACGATGAGGGCATTCAAAGAGTTGAGGGATAAAGCGAGGTCA TGCCACGTACAATGCCATAGCCAGCATCAACAACAACAACAGCAGAGACTCATTTGCAGCAAATTCACATGA
AA sequence Show only first row Show all	>Lus10025419 pacid=23150871 polypeptide=Lus10025419 locus=Lus10025419.g ID=Lus10025419.BGIv1.0 annot-version=v1.0 MVAGKVRAVMGLQKPPPPKPPSIPAPSGTAASNPSSKTVFSRSFGVYFPRSSSQVQPRPPDVTDLLRLVEELRERESRLRTELLEFKLLRESAAIVPKLE ADISAKNAEMETARRRIAEMEEREKKFEQIEDEIRELGKTATEKDEKCKEMEVEIRELRKIASEKDEKFRGMEEEIRELRRVASEKDEVQEQRFRGLMEV TMKSNLIRNLRRGGNKYLPENGSSRPENADVVMKRDETENEGTSQLTRCDSEELSESSTLLPNVRSRCPRVPKPPPPKRPSSSSCFSDQSASVNVSAPPP PPPLPPMMASTKPAPAALLPPPPPPPPPPKERRAGTAKVRRVPEVVEFYHSLMRRDSRKESAAGAADSAAATANSRDMIGEIENRSAYLLAIKTDVETQG EFIRFLIKEVQNAAFSDIEDVVPFVKWLDDELSYLVDERAVLKHFKWPEQKADAMREAAFGYCDLKKVESEASSFRDVARQPCTSALKKMQALVEKLEHG VYSLSRMRESAMKRYKEYGIPINWMLETGLVTQIKLASVKLAMKYMKRVSAELESVDSPSDEEDLVVQGVRFAFRVHQFAGGFDGETMRAFKELRDKARS CHVQCHSQHQQQQQQRLICSKFT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G18570			Tetratricopeptide repeat (TPR)...		Lus10025419 [exp]	0	1
AT4G12610		RAP74, ATRAP74	transcription activators;DNA b...		Lus10017289 [exp]	3.9	0.7452
AT1G73590		ATPIN1, PIN1	ARABIDOPSIS THALIANA PIN-FORME...		Lus10042003 [exp]	4.1	0.8109
AT1G73590		ATPIN1, PIN1	ARABIDOPSIS THALIANA PIN-FORME...		Lus10018006 [exp]	4.2	0.7950
AT1G73590		ATPIN1, PIN1	ARABIDOPSIS THALIANA PIN-FORME...		Lus10042004 [exp]	18.4	0.7333
AT4G37250			Leucine-rich repeat protein ki...		Lus10019315 [exp]	20.4	0.7394
AT3G06350		EMB3004, MEE32	MATERNAL EFFECT EMBRYO ARREST ...		Lus10033981 [exp]	25.2	0.7250
AT5G57090		MM31, ATPIN2, A...	WAVY ROOTS 6, ETHYLENE INSENSI...		Lus10018007 [exp]	29.6	0.7082
AT5G13520			peptidase M1 family protein (....		Lus10040362 [exp]	34.2	0.7150
AT5G05450			P-loop containing nucleoside t...		Lus10009838 [exp]	38.7	0.6201
AT5G49460		ACLB-2	ATP citrate lyase subunit B 2 ...		Lus10016910 [exp]	39.7	0.7274

Compare expression of checked genes

Lus10025419 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.