Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G28690 631 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G13600 298 / 1e-91 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G08510 293 / 1e-91 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G44230 295 / 9e-91 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G14820 296 / 2e-90 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G20540 275 / 9e-85 MEF21 mitochondrial editing factor 21 (.1) AT3G49142 278 / 3e-84 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G37170 278 / 6e-84 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G02750 280 / 8e-84 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G15930 277 / 1e-83 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015308 [exp] 1080 / 0 AT1G28690 632 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10005987 [exp] 310 / 3e-98 AT5G08510 602 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10024971 [exp] 290 / 4e-89 AT4G37380 772 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10009269 [exp] 290 / 4e-89 AT2G13600 874 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10015898 [exp] 291 / 2e-88 AT2G13600 899 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10014298 [exp] 286 / 9e-88 AT5G66520 748 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10029344 [exp] 285 / 2e-87 AT5G06540 803 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10020918 [exp] 284 / 5e-87 AT2G29760 474 / 3e-159 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10018223 [exp] 287 / 6e-87 AT2G29760 931 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G054000 [exp] 738 / 0 AT1G28690 672 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G175900 [exp] 307 / 5e-97 AT5G08510 608 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G044700 [exp] 301 / 3e-92 AT2G29760 1013 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.017G091600 [exp] 300 / 3e-92 AT4G37170 924 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G065500 [exp] 297 / 4e-92 AT5G06540 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G217900 [exp] 296 / 2e-91 AT2G22410 530 / 0.0 SLOW GROWTH 1 (.1) Potri.007G104700 [exp] 296 / 7e-91 AT2G13600 834 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.007G085500 [exp] 296 / 3e-90 AT2G22070 1088 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.003G088600 [exp] 291 / 2e-89 AT1G31430 690 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.001G321700 [exp] 291 / 2e-89 AT4G14050 808 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10025420 pacid=23150859 polypeptide=Lus10025420 locus=Lus10025420.g ID=Lus10025420.BGIv1.0 annot-version=v1.0 ATGGGGGAATGGAGGAAACTAAGATCTCGAATAGAAAATTGTGGCAATGGAAAAGGAGGAGGAGCAGAATATGGTGGTGGGGGCGGAAAAAACGAAGAAG AAGAAGGGTGGAGGGGGAGAGAGGAATTTCTTTTCTTTGAAATGTTAAATTTTAAATTTGATGCAACTCTCAGATCATTTGACGAAAAATACGATTTTAG GACGATTGAAAAAAACACTAAACTTAGGAGCCCTCTGAAACAAAATCCGACGCTTCGAGCTGCGAAGAACATCAATGGCGAAGCCAAGAAGCTGAATCCG TATGACAATATGAATAACAGCACCAAACTCCTGGCAATCCGAGCATTTCATCTCTTACCAACTCGGTTCTTCAATTCCATCCCTCAGACGACTCCCCACA GCACACAATACATGATCAATCAAACACCAGCTACTCTGTCATCAGCTCTTCAGCATTACATCAATTCAACCGCTCCTGGCCATGGCCGCAAGATCCACGC CCACGTCCTGAAAACAGGGTTCAAACCCAATACGAATGTGTCGATCAAAATCCTCATACTTTACTTGAAAGCCGGCTGCTTGAAGTACGCCCGCCAGGTG TTCGACGAAATGGCTCGGCGGACGCTCTCTGCTTACAATTATATGCTTGGTGGGTATTTGAGACAAGGGCTGGTCGAAGAATCAATCTGCTTGGTCCGAA AGTTGCTTGTCGATAGCCATGAAAGGCCTGATGGGTTTACTTTCTCCATGATTCTGAAAGCTTCGAGTGTTGTTAGTAGTAGTGGCTGCTGCTGCAATAT TGTGCTGCCGAGGAGATTGTGGAGTATCGTTCATGGTCAGATTGTTAGGTTGGATATTGAGCCTGATGATGTTCTCTATACCGCGGTTGTTGATTCGTAT GTGAAGGCTGGGAATGTTGGTTATGGAAGGAGAGTTTTTGACTTGATGATGGATAGAAATGTTATATGTTCAACGTCGTTGATATCTGGGTATATGAATT ACGGCTCTGTTGCAGAGGCTGAAGAGATATTCGAGAGAACGGAGACGAAGGATATTGTAGTTTTCAATGCCATGATCGAAGGATATAGCAAGTCGGAAGG AACAGCTACGAAAGCGCTGGAGTTCTACATCGATATGCAGAGGAGTGGTTTCCGGCCTAATGTTTCTACGTTTGCTAGTGTCATTGGAGCTTGCTCTCTT CTGACAGATGTCGAGCTTGGCGTACAGATCCAGAGTCAGATCATGAAGATCTGTTTTACAAACATAAAAATAGCAAGTGCTTTGGTTGACATGTATGCAA AATGTGGGAAGATAGAGGATGCACGGAGAGTCTTTGATGACATGACACAAAAGAATGTGTTCTCTTGGAGTTCGATGATCGATGGATATGGCAAGAGCGG GGAACCGGACAAAGCACTCGAACTTTTCGGTCGGATGGAACAATTTGGTGGTGTCGAGCCAAACCATGTTACTTTCCTTGCGGCTATCTCGGCCTGTGGA CATGGTGGCTTAGTTGCTAAAGGCCGAGAGATCTTCGATAGTATGGAAAGAGATTACTCTCTCAAGCCGAGGATGGAGCACTATGCTTGTATTGTTGATC TCTTAGGACGAGCAGGGTGTTTGCAGGAAGCGTGGGAGCTCGTGATGGGGATGCCCGAAATGCCGAACAGTGATGTCTGGGCAGCCCTGTTGAATTCGTG TAATTTCCATGGCAGCGTCGAGATGGCGAGTGTAGCTGCAAATGAGCTCTTCAAACTGAATGCTAAAGAGCGCCCTGGTGCATACGTTTCGTTTTCCAAT ACCTTAGCGGCAGCCGGGAAATGGGATAATGTTAGTCAACTCAGAGATGTCATGAAGGTAAGGGGAGTGTTGAAAGATACTGGTTCCAGTTGGGTTGGGA CTGAATCTTTTCCATGA
AA sequence Show only first row Show all	>Lus10025420 pacid=23150859 polypeptide=Lus10025420 locus=Lus10025420.g ID=Lus10025420.BGIv1.0 annot-version=v1.0 MGEWRKLRSRIENCGNGKGGGAEYGGGGGKNEEEEGWRGREEFLFFEMLNFKFDATLRSFDEKYDFRTIEKNTKLRSPLKQNPTLRAAKNINGEAKKLNP YDNMNNSTKLLAIRAFHLLPTRFFNSIPQTTPHSTQYMINQTPATLSSALQHYINSTAPGHGRKIHAHVLKTGFKPNTNVSIKILILYLKAGCLKYARQV FDEMARRTLSAYNYMLGGYLRQGLVEESICLVRKLLVDSHERPDGFTFSMILKASSVVSSSGCCCNIVLPRRLWSIVHGQIVRLDIEPDDVLYTAVVDSY VKAGNVGYGRRVFDLMMDRNVICSTSLISGYMNYGSVAEAEEIFERTETKDIVVFNAMIEGYSKSEGTATKALEFYIDMQRSGFRPNVSTFASVIGACSL LTDVELGVQIQSQIMKICFTNIKIASALVDMYAKCGKIEDARRVFDDMTQKNVFSWSSMIDGYGKSGEPDKALELFGRMEQFGGVEPNHVTFLAAISACG HGGLVAKGREIFDSMERDYSLKPRMEHYACIVDLLGRAGCLQEAWELVMGMPEMPNSDVWAALLNSCNFHGSVEMASVAANELFKLNAKERPGAYVSFSN TLAAAGKWDNVSQLRDVMKVRGVLKDTGSSWVGTESFP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G28690			Tetratricopeptide repeat (TPR)...		Lus10025420 [exp]	0	1
AT1G16480			Tetratricopeptide repeat (TPR)...		Lus10013578 [exp]	3.7	0.9170
AT5G36930			Disease resistance protein (TI...		Lus10038532 [exp]	4.2	0.9147
AT5G26240		ATCLC-D, CLC-D	chloride channel D (.1)		Lus10002453 [exp]	11.3	0.9259
AT1G80930			MIF4G domain-containing protei...		Lus10002210 [exp]	11.7	0.8884
AT4G23050			PAS domain-containing protein ...		Lus10024502 [exp]	12.1	0.8598
AT3G59410		ATGCN2, GCN2	ARABIDOPSIS THALIANA GENERAL C...		Lus10014895 [exp]	14.3	0.8777
AT5G20660			Zn-dependent exopeptidases sup...		Lus10009230 [exp]	14.4	0.8915
AT5G05980		ATDFB, FPGS1	folylpolyglutamate synthetase ...		Lus10004694 [exp]	16.4	0.8707
AT5G02520			unknown protein		Lus10025814 [exp]	17.6	0.8889
AT1G15910		FDM1	factor of DNA methylation 1, X...		Lus10009217 [exp]	17.7	0.9006

Compare expression of checked genes

Lus10025420 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.