Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G12940 105 / 6e-27 ATNRT2.5 nitrate transporter2.5 (.1) AT1G08100 72 / 6e-15 NRT2;2AT, ACH2, ATNRT2.2 nitrate transporter 2.2 (.1) AT1G08090 70 / 3e-14 LIN1, ACH1, NRT2;1AT, ATNRT2:1 LATERAL ROOT INITIATION 1, nitrate transporter 2:1 (.1) AT5G60770 64 / 2e-12 ATNRT2.4 ARABIDOPSIS THALIANA NITRATE TRANSPORTER 2.4, nitrate transporter 2.4 (.1) AT5G60780 62 / 1e-11 ATNRT2.3 ARABIDOPSIS THALIANA NITRATE TRANSPORTER 2.3, nitrate transporter 2.3 (.1) AT5G14570 59 / 2e-10 ATNRT2.7 high affinity nitrate transporter 2.7 (.1) AT3G45060 51 / 1e-07 ATNRT2.6 ARABIDOPSIS THALIANA HIGH AFFINITY NITRATE TRANSPORTER 2.6, high affinity nitrate transporter 2.6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013042 [exp] 229 / 2e-73 AT1G12940 635 / 0.0 nitrate transporter2.5 (.1) Lus10030902 [exp] 108 / 5e-28 AT1G12940 751 / 0.0 nitrate transporter2.5 (.1) Lus10030588 [exp] 105 / 6e-27 AT1G12940 737 / 0.0 nitrate transporter2.5 (.1) Lus10026527 [exp] 92 / 7e-22 AT5G60770 759 / 0.0 ARABIDOPSIS THALIANA NITRATE TRANSPORTER 2.4, nitrate transporter 2.4 (.1) Lus10008767 [exp] 62 / 2e-11 AT5G14570 483 / 1e-168 high affinity nitrate transporter 2.7 (.1) Lus10016121 [exp] 59 / 2e-10 AT1G08090 583 / 0.0 LATERAL ROOT INITIATION 1, nitrate transporter 2:1 (.1) Lus10016120 [exp] 54 / 1e-08 AT1G08090 533 / 0.0 LATERAL ROOT INITIATION 1, nitrate transporter 2:1 (.1) Lus10016119 [exp] 47 / 8e-07 AT5G60770 177 / 4e-54 ARABIDOPSIS THALIANA NITRATE TRANSPORTER 2.4, nitrate transporter 2.4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G087700 [exp] 136 / 2e-38 AT1G12940 640 / 0.0 nitrate transporter2.5 (.1) Potri.T124708 [exp] 112 / 2e-29 AT1G12940 684 / 0.0 nitrate transporter2.5 (.1) Potri.015G081300 [exp] 109 / 2e-28 AT1G12940 698 / 0.0 nitrate transporter2.5 (.1) Potri.T124608 [exp] 109 / 4e-28 AT1G12940 688 / 0.0 nitrate transporter2.5 (.1) Potri.009G008500 [exp] 82 / 1e-18 AT1G08090 830 / 0.0 LATERAL ROOT INITIATION 1, nitrate transporter 2:1 (.1) Potri.009G008600 [exp] 82 / 1e-18 AT1G08090 832 / 0.0 LATERAL ROOT INITIATION 1, nitrate transporter 2:1 (.1) Potri.001G348300 [exp] 68 / 1e-13 AT5G14570 509 / 1e-178 high affinity nitrate transporter 2.7 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10025421 pacid=23150886 polypeptide=Lus10025421 locus=Lus10025421.g ID=Lus10025421.BGIv1.0 annot-version=v1.0 ATGGCGGGAACGAAGAACGAAATTCTCCATGCAATGAATTTGGGCGTCCATCAGTGGATTAGGTTGAAGGCGAAGGCCATGAGGAGCTGGGCGGCGCCAA CACCGAGGTTGCCCCAACCGGCGGCGACAGCGTTGGTGGTGGCGAAGTTGTTGGATGAGAACATGGAACTCATCCAGAACTGGGCGGAGACGAAGGTGAA GGTGGAGAGGGAGAAGCCGGTGAAGGATCTGAGGAGGAGGAGGAAGGAAGCAGGGGAGGAAGCTATGGCTGTACAAAGGATGGCGGGAGAGCAGAGGAGG ATTAAGGAGGCGGAGGCGAGTCGGGGGCCGAAGAGGTCGCAAGCGGTGCCGATAGCGAGGCGGACGAGGACTGCGCCAGCGACGGAGGCGATTCCGGCGT TGCCGATGTCGATGGATGTCAGGTCGAGGTCGTCGCGGATTACGGGGAGTAACAGCGCAGCGGCGAATGTGGAGACGAAGCAGGCGAAGAAGGATAGCCA TGATAGGAGGAAGAAATAA
AA sequence Show only first row Show all	>Lus10025421 pacid=23150886 polypeptide=Lus10025421 locus=Lus10025421.g ID=Lus10025421.BGIv1.0 annot-version=v1.0 MAGTKNEILHAMNLGVHQWIRLKAKAMRSWAAPTPRLPQPAATALVVAKLLDENMELIQNWAETKVKVEREKPVKDLRRRRKEAGEEAMAVQRMAGEQRR IKEAEASRGPKRSQAVPIARRTRTAPATEAIPALPMSMDVRSRSSRITGSNSAAANVETKQAKKDSHDRRKK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10025421 [exp]	0	1
AT1G02400		ATGA2OX4, ATGA2...	DOWNSTREAM TARGET OF AGL15 1, ...		Lus10017094 [exp]	7.7	0.9437
AT1G21000			PLATZ transcription factor fam...		Lus10002700 [exp]	9.8	0.9438
					Lus10041676 [exp]	10.2	0.9422
AT5G63450		CYP94B1	"cytochrome P450, family 94, s...		Lus10033852 [exp]	11.5	0.9307
AT2G41750			DTW domain-containing protein ...		Lus10012192 [exp]	13.9	0.9056
AT2G45510		CYP704A2	"cytochrome P450, family 704, ...		Lus10015018 [exp]	16.1	0.9430
AT4G33280	B3	REM16	AP2/B3-like transcriptional fa...		Lus10032749 [exp]	18.5	0.9188
AT2G01350		QPT	quinolinate phoshoribosyltrans...		Lus10018780 [exp]	23.2	0.9294
AT5G39820	NAC	ANAC094	NAC domain containing protein ...		Lus10007263 [exp]	25.6	0.9323
AT4G34890		ATXDH1	xanthine dehydrogenase 1 (.1)		Lus10034306 [exp]	27.7	0.9293

Compare expression of checked genes

Lus10025421 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.