Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45930 595 / 0 CHLI-2, CHLI2 magnesium chelatase i2 (.1) AT4G18480 580 / 0 CHLI-1, CHL11, CH-42, CH42, CHLI1 CHLORINA 42, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G08520 186 / 7e-52 V157, ALB1, ALB-1V, PDE166, CHLD PIGMENT DEFECTIVE EMBRYO 166, ALBINA 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015302 [exp] 750 / 0 AT5G45930 632 / 0.0 magnesium chelatase i2 (.1) Lus10019033 [exp] 186 / 4e-52 AT1G08520 1163 / 0.0 PIGMENT DEFECTIVE EMBRYO 166, ALBINA 1 (.1) Lus10005013 [exp] 184 / 2e-51 AT1G08520 1146 / 0.0 PIGMENT DEFECTIVE EMBRYO 166, ALBINA 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G063400 [exp] 654 / 0 AT5G45930 605 / 0.0 magnesium chelatase i2 (.1) Potri.004G053400 [exp] 630 / 0 AT5G45930 598 / 0.0 magnesium chelatase i2 (.1) Potri.009G049400 [exp] 183 / 4e-51 AT1G08520 604 / 0.0 PIGMENT DEFECTIVE EMBRYO 166, ALBINA 1 (.1) Potri.001G254304 [exp] 62 / 2e-11 AT1G08520 120 / 3e-32 PIGMENT DEFECTIVE EMBRYO 166, ALBINA 1 (.1) Potri.001G254308 [exp] 58 / 3e-10 AT1G08520 160 / 1e-46 PIGMENT DEFECTIVE EMBRYO 166, ALBINA 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF01078 [flax] [poplar] Mg_chelatase Magnesium chelatase, subunit ChlI
Representative CDS sequence Show only first row Show all	>Lus10025423 pacid=23150873 polypeptide=Lus10025423 locus=Lus10025423.g ID=Lus10025423.BGIv1.0 annot-version=v1.0 ATGGCGTCGATCCTGGGCAATTCTTCCGCCGCAATCTTATCGTCCAGACCCATCTGTTCTTCCACTTCCAAATCCTCTTCCTCCTTTCCTTCCGTTTCCT TACTTCCATCAGGGCAAAGCTACTGGAGGAAGCAGTACTGCAATGGAGGTGTGAAGAAAGGAAGGTCTCAGCTGCACATTGCTAACGTTGCCACCGAGAT TAACGCCGTTGAGCCGGCTGCAAGGGTTGCGGATAAGGAAAGCCGGAGGCCAGTGTATCCCTTTGCAGCAATAGTTGGACAAGATGAGATGAAACTCTGC CTCCTCTTGAATGTGATCGATCCCAAGATAGGAGGAGTGATGATAATGGGAGATAGAGGCACTGGAAAATCCACGACTGTGCGTTCGTTGACCGATTTGC TCCCGGAGATCAGGGTGGTCTCGGGCGATCCTTACAACTCGGACCCTGAAGACCCCGAGGCCATGGGGATGGAAGTTCGAGAGAGCGTCAACAAGGGGAA AGAACTCACGGTCGTGCTTACCAAAATTAACATGGTTGACTTGCCATTAGGAGCTACTGAAGATAGGGTCTGTGGCACGATTGACATCGAGAAGGCATTG ACTGAAGGTGTTAAGGCGTTCGAGCCGGGACTTCTTGCTAAAGCGAACCGAGGGATTCTTTACGTCGATGAAGTCAATCTCCTTGATGATCATTTGGTTG ATGTTCTTCTTGATTCCGCTGCCTCGGGATGGAACACGGTCGAGAGGGAAGGTATTTCGATCTCGCACCCTGCTCGGTTTATCCTGATTGGATCCGGTAA CCCGGAAGAAGGAGAGCTCAGACCTCAGCTCCTTGATAGGTTTGGTATGCATGCACAGGTTGGGACGGTTAAAGATGCAGAGCTGAGGGTGAAGATTGTC GAGGAGAGGGCTCGATTCGACAGGAACCCGAAGGAGTTCCGCGGCTCTTACAAGGCCGAACAAGAGAAGCTTCAGCAACAGATTGACGCTGCTAGGGCGT GTCTCGGTTCTGTACAGATCGACCACGACCTGAAAGTCAAGATCTCGAAGGTATGCGCGGAGCTGAATGTCGACGGATTGAGAGGAGACATTGTGACTAA TAGAGCTGCAAAGGCTCTTGCTTCACTGAAAGGCAGAGACAAAGTAACTGCAGAGGATATCGCCACTGTGATTCCCAACTGCTTGAGACACCGTCTTCGA AAGGATCCGCTCGAATCCATCGACTCCGGGTTGCTCGTGATCGAGAAATTTTACGAGGTTTTCACCTGA
AA sequence Show only first row Show all	>Lus10025423 pacid=23150873 polypeptide=Lus10025423 locus=Lus10025423.g ID=Lus10025423.BGIv1.0 annot-version=v1.0 MASILGNSSAAILSSRPICSSTSKSSSSFPSVSLLPSGQSYWRKQYCNGGVKKGRSQLHIANVATEINAVEPAARVADKESRRPVYPFAAIVGQDEMKLC LLLNVIDPKIGGVMIMGDRGTGKSTTVRSLTDLLPEIRVVSGDPYNSDPEDPEAMGMEVRESVNKGKELTVVLTKINMVDLPLGATEDRVCGTIDIEKAL TEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDVLLDSAASGWNTVEREGISISHPARFILIGSGNPEEGELRPQLLDRFGMHAQVGTVKDAELRVKIV EERARFDRNPKEFRGSYKAEQEKLQQQIDAARACLGSVQIDHDLKVKISKVCAELNVDGLRGDIVTNRAAKALASLKGRDKVTAEDIATVIPNCLRHRLR KDPLESIDSGLLVIEKFYEVFT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G45930		CHLI-2, CHLI2	magnesium chelatase i2 (.1)		Lus10025423 [exp]	0	1
AT5G54190		PORA	protochlorophyllide oxidoreduc...		Lus10018579 [exp]	1.0	0.9698
AT4G29590			S-adenosyl-L-methionine-depend...		Lus10040550 [exp]	1.4	0.9647
AT5G14320		EMB3137	EMBRYO DEFECTIVE 3137, Ribosom...		Lus10018192 [exp]	3.5	0.9608
AT5G54190		PORA	protochlorophyllide oxidoreduc...		Lus10039810 [exp]	3.9	0.9641
AT3G62030		CYP20-3, ROC4	cyclophilin 20-3, rotamase CYP...		Lus10009255 [exp]	4.2	0.9430
AT3G54210			Ribosomal protein L17 family p...		Lus10000382 [exp]	4.5	0.9579
AT2G18710		SCY1	SECY homolog 1 (.1)		Lus10008901 [exp]	4.9	0.9484
AT1G09900			Pentatricopeptide repeat (PPR-...		Lus10037012 [exp]	5.3	0.9441
AT3G01480		ATCYP38, CYP38	ARABIDOPSIS CYCLOPHILIN 38, cy...		Lus10014534 [exp]	5.9	0.9539
AT2G24090			Ribosomal protein L35 (.1)		Lus10007706 [exp]	6.0	0.9563

Compare expression of checked genes

Lus10025423 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.