Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G28960 367 / 2e-128 ATNUDX15, ATNUDT15 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 15, nudix hydrolase homolog 15 (.1.2.3.4.5) AT2G33980 333 / 7e-115 ATNUDT22 nudix hydrolase homolog 22 (.1) AT5G45940 241 / 8e-80 AtNUDX11, ATNUDT11 Arabidopsis thaliana nudix hydrolase homolog 11, nudix hydrolase homolog 11 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015301 [exp] 460 / 3e-165 AT1G28960 384 / 2e-135 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 15, nudix hydrolase homolog 15 (.1.2.3.4.5) Lus10041965 [exp] 280 / 8e-95 AT2G33980 255 / 2e-85 nudix hydrolase homolog 22 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G053100 [exp] 388 / 5e-137 AT1G28960 387 / 2e-136 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 15, nudix hydrolase homolog 15 (.1.2.3.4.5) Potri.011G063300 [exp] 384 / 6e-136 AT1G28960 379 / 1e-133 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 15, nudix hydrolase homolog 15 (.1.2.3.4.5) Potri.004G053200 [exp] 288 / 2e-98 AT1G28960 279 / 5e-95 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 15, nudix hydrolase homolog 15 (.1.2.3.4.5) Potri.004G053300 [exp] 259 / 6e-87 AT2G33980 271 / 1e-91 nudix hydrolase homolog 22 (.1) Potri.016G121500 [exp] 228 / 7e-74 AT1G28960 234 / 2e-76 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 15, nudix hydrolase homolog 15 (.1.2.3.4.5)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0261 [flax] [poplar] NUDIX PF00293 [flax] [poplar] NUDIX NUDIX domain
Representative CDS sequence Show only first row Show all	>Lus10025424 pacid=23150889 polypeptide=Lus10025424 locus=Lus10025424.g ID=Lus10025424.BGIv1.0 annot-version=v1.0 ATGTTCTCGCTCCTCAGAACAAAGCTGCTGCCTTTGCCATCATCATTGCCCCTCATCTTCCCCAAAACCACGACGACGAACCACTCATTCCCAGTTATCT TCATGAACTCTACTGGATCCAACCGGCTGCTGGCTTTAACACAGCAGCTCCGCCTCTACTCGCCGCCGCCGCCACCACCGGAGGACGAAATCGATGAGGA GGAAACCGCCGGGAAAGTGACCACCCAAGTCGGGTTTCAAGAATCCGCTACCCCGATTGCCGATAGGTTCAGACCCAAAAGAGCAGCAGTCCTCATTTGC ATCTTCGAAGGCGATTCCGGCGAGTTCCGCGTCATTTTGACCAAGAGATCGTCCAGATTGTCCACTCACTCTGGTGAAGTTTCATTGCCTGGTGGGAAAG CTGAAGAGAGTGACAAGGATGATGGAGACACAGCAACTAGAGAAGCCAAAGAGGAAATTGGACTGGATCCTTCTCTTGTTGATGTCATTACAGTTCTGGA ACCCTTCTTATCCAAGCATCTGTTGAGAGTAGTTCCAGTAGTTGGCATTCTAAGGGATGGGAAAGCATTCACTGCAGTACCGAATCCAGCTGAAGTCGAA TCCATTTTCGATGCTCCTTTGGAAATGTTCATCAAGGACGAAAACCGAAGGGTTGAAGAACGAGAGTGGATGGGTGAGAAGTATCTCATCCATTACTTCG ATTATGAAACGGACGGCAATAAGAAGTACGTGATCTGGGGATTGACTGCTGGCATTCTGATCAAAGCTGCATCAGTAGTCTACAATCGGCCTCCTGCGTT CTTGGAGCAGACACCTAAGTTCAAGCTCCCTCGTGACCTGAAAAACGGTACTGTGATGCGCTGA
AA sequence Show only first row Show all	>Lus10025424 pacid=23150889 polypeptide=Lus10025424 locus=Lus10025424.g ID=Lus10025424.BGIv1.0 annot-version=v1.0 MFSLLRTKLLPLPSSLPLIFPKTTTTNHSFPVIFMNSTGSNRLLALTQQLRLYSPPPPPPEDEIDEEETAGKVTTQVGFQESATPIADRFRPKRAAVLIC IFEGDSGEFRVILTKRSSRLSTHSGEVSLPGGKAEESDKDDGDTATREAKEEIGLDPSLVDVITVLEPFLSKHLLRVVPVVGILRDGKAFTAVPNPAEVE SIFDAPLEMFIKDENRRVEEREWMGEKYLIHYFDYETDGNKKYVIWGLTAGILIKAASVVYNRPPAFLEQTPKFKLPRDLKNGTVMR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G28960		ATNUDX15, ATNUD...	ARABIDOPSIS THALIANA NUDIX HYD...		Lus10025424 [exp]	0	1
AT1G63830			PLAC8 family protein (.1.2.3)		Lus10028774 [exp]	1.4	0.8201
AT1G29670			GDSL-like Lipase/Acylhydrolase...		Lus10028738 [exp]	8.7	0.7894
AT2G47485			unknown protein		Lus10028487 [exp]	23.4	0.8094
AT5G52200		AtI-2	inhibitor-2, phosphoprotein ph...		Lus10014992 [exp]	33.6	0.7639
AT4G34460		ELK4, AGB1, ATA...	ERECTA-LIKE 4, GTP binding pro...		Lus10040464 [exp]	38.2	0.7306
AT2G48010		RKF3	receptor-like kinase in in flo...		Lus10027970 [exp]	78.7	0.7385

Compare expression of checked genes

Lus10025424 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.