Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G33990 207 / 1e-65 IQD9 IQ-domain 9 (.1) AT3G15050 192 / 8e-60 IQD10 IQ-domain 10 (.1) AT2G26180 108 / 2e-26 IQD6 IQ-domain 6 (.1) AT3G22190 102 / 3e-24 IQD5 IQ-domain 5 (.1.2) AT5G03040 100 / 2e-23 IQD2 IQ-domain 2 (.1.2.3) AT2G26410 99 / 6e-23 IQD4 IQ-domain 4 (.1) AT3G09710 96 / 5e-22 IQD1 IQ-domain 1 (.1.2) AT1G72670 91 / 3e-20 IQD8 IQ-domain 8 (.1) AT3G52290 89 / 2e-19 IQD3 IQ-domain 3 (.1) AT3G59690 73 / 3e-14 IQD13 IQ-domain 13 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015300 [exp] 511 / 0 AT2G33990 242 / 3e-79 IQ-domain 9 (.1) Lus10036508 [exp] 120 / 2e-30 AT5G03040 343 / 1e-113 IQ-domain 2 (.1.2.3) Lus10041419 [exp] 117 / 1e-29 AT5G03040 345 / 2e-115 IQ-domain 2 (.1.2.3) Lus10013362 [exp] 107 / 5e-26 AT3G22190 338 / 4e-113 IQ-domain 5 (.1.2) Lus10013522 [exp] 96 / 5e-22 AT2G26180 403 / 2e-138 IQ-domain 6 (.1) Lus10004107 [exp] 94 / 3e-21 AT3G22190 308 / 6e-101 IQ-domain 5 (.1.2) Lus10019916 [exp] 89 / 2e-19 AT5G03040 410 / 9e-141 IQ-domain 2 (.1.2.3) Lus10026486 [exp] 87 / 1e-18 AT5G03040 414 / 4e-140 IQ-domain 2 (.1.2.3) Lus10025593 [exp] 82 / 4e-17 AT3G59690 498 / 1e-172 IQ-domain 13 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G063200 [exp] 301 / 8e-102 AT2G33990 238 / 9e-78 IQ-domain 9 (.1) Potri.004G053000 [exp] 283 / 8e-95 AT2G33990 236 / 5e-77 IQ-domain 9 (.1) Potri.001G375700 [exp] 225 / 3e-72 AT3G15050 245 / 1e-80 IQ-domain 10 (.1) Potri.011G096500 [exp] 221 / 2e-70 AT3G15050 262 / 2e-87 IQ-domain 10 (.1) Potri.001G215200 [exp] 117 / 9e-30 AT3G22190 272 / 4e-87 IQ-domain 5 (.1.2) Potri.010G218100 [exp] 114 / 3e-28 AT5G03040 323 / 8e-106 IQ-domain 2 (.1.2.3) Potri.006G131100 [exp] 111 / 2e-27 AT5G03040 369 / 1e-123 IQ-domain 2 (.1.2.3) Potri.009G015800 [exp] 107 / 5e-26 AT3G22190 286 / 9e-93 IQ-domain 5 (.1.2) Potri.006G226600 [exp] 106 / 1e-25 AT2G26180 386 / 1e-131 IQ-domain 6 (.1) Potri.016G086300 [exp] 103 / 1e-24 AT5G03040 372 / 6e-125 IQ-domain 2 (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10025425 pacid=23150820 polypeptide=Lus10025425 locus=Lus10025425.g ID=Lus10025425.BGIv1.0 annot-version=v1.0 ATGGGTTCTGGAAACTGGATCAAGACAATGATGAACTTGAAGAAGGGGAAGAATGGGTATCCAAAACAACTCAAGGGTTCTTCTCCATCTTCAAAATCGA ATGGCTTCAGATTGAAGAAAGTTTCAACTAGTTGTGCAGATTTCCATGCCAAGTCCAAACTTCTCAACATACCAGTAGAGGATTTGGCTGCCACTCACAT TCAAACTGCATTCCGTGCATACAGAGCAAGGAGAGCATTACGCCGCATGAAAGGGACTGCAAGACTACAGACCAGGACCAAGCATCAATTGATTGCGAAG CAAGCTAATTCGACATTGAACCACCTTCATCTGTGGAGCAATATGCAGGCCCAGATCAGAACTCGCCGCCAGTTTATGGTGACCGAGGGTCGTTCAAGGC AGAAGAAGTTGGAGAATCAACTTAAACTGGAGGCAAAGCTTCATGGCGTAGAGGTGGAATGGAATAGTGGATGTGAAACAATGGAGGAGATTCTTGCAAG AATACACCAGAGGGAAGAAGCAGCTGTGAAGAGGGAAAGAGCAATGGCGTATGCCTTCTCTCACCAGTGGAGGGCCAACTGCAATCAGAGCCTTGGTGGC TACGAAGTGGGGAAAGCCAACTGGGGATGGAGCTGGATGGACCGCTGGATCGCTGCTCGACCATGGGAAAGCCGTGTTGTCCCCGCGAAATCTACGATCA CTACTCCAAAGAAACCTCAGAATAAACAGGCTAACAAGATTGCCAGTACTTCCCCTTCTACTGCTAAAACACCAGCTTCTTCCAAGCTCTCCTCCAATGG CAGTACCAAAGCCAGGAGATTAAGTTATCCAGTCACCGGGAAGCTATCTAGCACACTTGATCGAAGCCGAAAATCGGCAGAAATGGAAGACATCAAACCA GTAGCAGCTGCTTCTTCTTCTTCTTCTTCTGCTATCTTAGTCTCATGA
AA sequence Show only first row Show all	>Lus10025425 pacid=23150820 polypeptide=Lus10025425 locus=Lus10025425.g ID=Lus10025425.BGIv1.0 annot-version=v1.0 MGSGNWIKTMMNLKKGKNGYPKQLKGSSPSSKSNGFRLKKVSTSCADFHAKSKLLNIPVEDLAATHIQTAFRAYRARRALRRMKGTARLQTRTKHQLIAK QANSTLNHLHLWSNMQAQIRTRRQFMVTEGRSRQKKLENQLKLEAKLHGVEVEWNSGCETMEEILARIHQREEAAVKRERAMAYAFSHQWRANCNQSLGG YEVGKANWGWSWMDRWIAARPWESRVVPAKSTITTPKKPQNKQANKIASTSPSTAKTPASSKLSSNGSTKARRLSYPVTGKLSSTLDRSRKSAEMEDIKP VAAASSSSSSAILVS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G33990		IQD9	IQ-domain 9 (.1)		Lus10025425 [exp]	0	1
AT1G62990	HD	IXR11, KNAT7	KNOTTED-like homeobox of Arabi...		Lus10024485 [exp]	1.7	0.8934
AT1G62990	HD	IXR11, KNAT7	KNOTTED-like homeobox of Arabi...		Lus10001195 [exp]	2.4	0.8908
AT1G62990	HD	IXR11, KNAT7	KNOTTED-like homeobox of Arabi...		Lus10017824 [exp]	3.0	0.8852
AT3G45600		TET3	tetraspanin3 (.1)		Lus10023338 [exp]	5.3	0.8292
AT5G58000			Reticulon family protein (.1)		Lus10036611 [exp]	5.7	0.7938
AT1G47310			unknown protein		Lus10011672 [exp]	6.5	0.7974
AT5G38900			Thioredoxin superfamily protei...		Lus10005083 [exp]	7.7	0.8217
AT1G31940			unknown protein		Lus10010425 [exp]	8.1	0.8383
AT5G38895			RING/U-box superfamily protein...		Lus10005084 [exp]	8.7	0.8423
AT1G01430		TBL25	TRICHOME BIREFRINGENCE-LIKE 25...		Lus10029454 [exp]	12.2	0.8422

Compare expression of checked genes

Lus10025425 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.