Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G32390 97 / 7e-24 GLR6, ATGLR3.5 glutamate receptor 3.5 (.1.2.3) AT3G04110 95 / 4e-23 ATGLR1.1, GLR1 glutamate receptor 1.1 (.1) AT2G32400 93 / 1e-22 ATGLR3.7, GLR5 GLUTAMATE RECEPTOR 3.7, glutamate receptor 5 (.1) AT1G05200 93 / 1e-22 GLUR3, ATGLR3.4 glutamate receptor 3.4 (.1.2) AT5G48400 93 / 2e-22 ATGLR1.2 GLUTAMATE RECEPTOR 1.2, Glutamate receptor family protein (.1.2) AT4G35290 91 / 7e-22 ATGLUR2, ATGLR3.2, GLUR2 GLUTAMATE RECEPTOR 3.2, glutamate receptor 2 (.1.2) AT5G48410 91 / 1e-21 ATGLR1.3 ARABIDOPSIS THALIANA GLUTAMATE RECEPTOR 1.3, glutamate receptor 1.3 (.1) AT2G29120 91 / 1e-21 ATGLR2.7 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) AT2G29100 90 / 2e-21 ATGLR2.9 GLUTAMATE RECEPTOR 2.9, glutamate receptor 2.9 (.1) AT2G17260 89 / 3e-21 ATGLR3.1, ATGLR2, GLR2 glutamate receptor 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013952 [exp] 123 / 4e-33 AT2G29120 377 / 1e-116 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Lus10005276 [exp] 122 / 4e-33 AT1G05200 274 / 4e-83 glutamate receptor 3.4 (.1.2) Lus10013976 [exp] 123 / 6e-33 AT2G29110 372 / 1e-114 glutamate receptor 2.8 (.1) Lus10039671 [exp] 99 / 2e-24 AT1G05200 1239 / 0.0 glutamate receptor 3.4 (.1.2) Lus10026553 [exp] 93 / 2e-22 AT4G35290 1035 / 0.0 GLUTAMATE RECEPTOR 3.2, glutamate receptor 2 (.1.2) Lus10027171 [exp] 93 / 2e-22 AT1G05200 1243 / 0.0 glutamate receptor 3.4 (.1.2) Lus10039672 [exp] 90 / 2e-21 AT2G32400 969 / 0.0 GLUTAMATE RECEPTOR 3.7, glutamate receptor 5 (.1) Lus10013838 [exp] 90 / 3e-21 AT1G42540 859 / 0.0 glutamate receptor 3.3 (.1) Lus10027170 [exp] 89 / 4e-21 AT2G32400 970 / 0.0 GLUTAMATE RECEPTOR 3.7, glutamate receptor 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G062750 [exp] 139 / 7e-40 AT2G29120 258 / 7e-77 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Potri.004G052400 [exp] 134 / 1e-36 AT2G29100 429 / 3e-135 GLUTAMATE RECEPTOR 2.9, glutamate receptor 2.9 (.1) Potri.004G052500 [exp] 132 / 4e-36 AT2G29100 445 / 3e-141 GLUTAMATE RECEPTOR 2.9, glutamate receptor 2.9 (.1) Potri.011G062600 [exp] 131 / 5e-36 AT2G29120 435 / 2e-137 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Potri.011G062900 [exp] 131 / 6e-36 AT5G11210 436 / 3e-139 ARABIDOPSIS THALIANA GLU, glutamate receptor 2.5 (.1) Potri.004G052600 [exp] 126 / 4e-34 AT2G29100 392 / 3e-121 GLUTAMATE RECEPTOR 2.9, glutamate receptor 2.9 (.1) Potri.014G152200 [exp] 101 / 3e-25 AT1G05200 1210 / 0.0 glutamate receptor 3.4 (.1.2) Potri.002G230000 [exp] 99 / 1e-24 AT1G05200 1198 / 0.0 glutamate receptor 3.4 (.1.2) Potri.018G096300 [exp] 97 / 5e-24 AT2G24720 651 / 0.0 glutamate receptor 2.2 (.1) Potri.018G096500 [exp] 97 / 6e-24 AT2G29110 662 / 0.0 glutamate receptor 2.8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0177 [flax] [poplar] PBP PF00497 [flax] [poplar] SBP_bac_3 Bacterial extracellular solute-binding proteins, family 3
Representative CDS sequence Show only first row Show all	>Lus10025426 pacid=23150819 polypeptide=Lus10025426 locus=Lus10025426.g ID=Lus10025426.BGIv1.0 annot-version=v1.0 ATGAGGACGTATGATGCTGCGGTGGGAGACATCACAATCCTGGCGGAGAGGTACAAGGACGTGGATTTCACGCAGCCCTTCACTGAATCAGGGCTGTCAA CTATAGTCCGATCATCGCCGGACGACTCGCCGTGGATGTTCATGAAGCCGTTCGATTTCAAGATGTGGATGATGTGTTTGGCTCTTCTGGCGTATACGAT CGTGGTGGTCTGGTTGATGGAGGGTAATTCGAACCCGGAGTTCCAAGGACCGTGGAATGCTCAGCTCGGGACTGCGCTCTGGTTCATCTTCTGCACTCTC TTCTTCGTCCAGGTTTTCCTCCACGGAATTGGGAGAGGGGATTGGCCAAAAATTGCCATTCCCTTCCTGGAACCGAATTCCGGCAGAGTAGTAATTCCGC ATTTGAACTGGAGTCGAATTCCGTTTCAAATGAGAAGGAATTGGAATTCCGTTATAAAGTGGCTAGATCCGAAATTGAATTCCGCCTAA
AA sequence Show only first row Show all	>Lus10025426 pacid=23150819 polypeptide=Lus10025426 locus=Lus10025426.g ID=Lus10025426.BGIv1.0 annot-version=v1.0 MRTYDAAVGDITILAERYKDVDFTQPFTESGLSTIVRSSPDDSPWMFMKPFDFKMWMMCLALLAYTIVVVWLMEGNSNPEFQGPWNAQLGTALWFIFCTL FFVQVFLHGIGRGDWPKIAIPFLEPNSGRVVIPHLNWSRIPFQMRRNWNSVIKWLDPKLNSA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G32390		GLR6, ATGLR3.5	glutamate receptor 3.5 (.1.2....		Lus10025426 [exp]	0	1
AT3G04720		HEL, PR-4, PR4	HEVEIN-LIKE, pathogenesis-rela...		Lus10006553 [exp]	5.8	0.8417
AT1G14600	GARP		Homeodomain-like superfamily p...		Lus10029808 [exp]	9.5	0.8086
AT2G29100		ATGLR2.9	GLUTAMATE RECEPTOR 2.9, gluta...		Lus10025427 [exp]	10.0	0.8931
AT2G42350			RING/U-box superfamily protein...		Lus10005104 [exp]	23.8	0.8887
AT2G47140		AtSDR5	short-chain dehydrogenase redu...		Lus10016178 [exp]	25.6	0.8814
AT2G15220			Plant basic secretory protein ...		Lus10019804 [exp]	32.2	0.8215
AT5G57510			unknown protein		Lus10017598 [exp]	32.3	0.8814
AT1G31720			Protein of unknown function (D...		Lus10034746 [exp]	36.2	0.8265
AT4G35580	NAC	NTL9, CBNAC	NAC transcription factor-like ...		Lus10006119 [exp]	46.7	0.8452
AT5G23540			Mov34/MPN/PAD-1 family protein...		Lus10012494 [exp]	63.2	0.8055

Compare expression of checked genes

Lus10025426 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.