Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G29100 78 / 4e-16 ATGLR2.9 GLUTAMATE RECEPTOR 2.9, glutamate receptor 2.9 (.1) AT2G29110 73 / 2e-14 ATGLR2.8 glutamate receptor 2.8 (.1) AT1G42540 68 / 7e-13 ATGLR3.3 glutamate receptor 3.3 (.1) AT1G05200 66 / 3e-12 GLUR3, ATGLR3.4 glutamate receptor 3.4 (.1.2) AT5G11180 65 / 1e-11 ATGLR2.6 ARABIDOPSIS THALIANA GLUTAMATE RECEPTOR 2.6, glutamate receptor 2.6 (.1) AT5G11210 62 / 9e-11 ATGLR2.5 ARABIDOPSIS THALIANA GLU, glutamate receptor 2.5 (.1) AT4G35290 62 / 1e-10 ATGLUR2, ATGLR3.2, GLUR2 GLUTAMATE RECEPTOR 3.2, glutamate receptor 2 (.1.2) AT2G17260 61 / 3e-10 ATGLR3.1, ATGLR2, GLR2 glutamate receptor 2 (.1) AT2G32390 58 / 2e-09 GLR6, ATGLR3.5 glutamate receptor 3.5 (.1.2.3) AT2G29120 57 / 4e-09 ATGLR2.7 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013976 [exp] 145 / 3e-39 AT2G29110 372 / 1e-114 glutamate receptor 2.8 (.1) Lus10013952 [exp] 123 / 1e-31 AT2G29120 377 / 1e-116 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Lus10005276 [exp] 101 / 2e-24 AT1G05200 274 / 4e-83 glutamate receptor 3.4 (.1.2) Lus10026235 [exp] 96 / 2e-22 AT2G29120 912 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Lus10013838 [exp] 76 / 1e-15 AT1G42540 859 / 0.0 glutamate receptor 3.3 (.1) Lus10026553 [exp] 76 / 3e-15 AT4G35290 1035 / 0.0 GLUTAMATE RECEPTOR 3.2, glutamate receptor 2 (.1.2) Lus10003436 [exp] 73 / 2e-14 AT2G29120 867 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Lus10026552 [exp] 72 / 4e-14 AT4G35290 1025 / 0.0 GLUTAMATE RECEPTOR 3.2, glutamate receptor 2 (.1.2) Lus10013837 [exp] 72 / 4e-14 AT4G35290 1016 / 0.0 GLUTAMATE RECEPTOR 3.2, glutamate receptor 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G062750 [exp] 162 / 6e-47 AT2G29120 258 / 7e-77 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Potri.011G062900 [exp] 155 / 1e-42 AT5G11210 436 / 3e-139 ARABIDOPSIS THALIANA GLU, glutamate receptor 2.5 (.1) Potri.011G063000 [exp] 142 / 2e-40 AT1G05200 185 / 7e-52 glutamate receptor 3.4 (.1.2) Potri.004G052600 [exp] 142 / 2e-38 AT2G29100 392 / 3e-121 GLUTAMATE RECEPTOR 2.9, glutamate receptor 2.9 (.1) Potri.011G062600 [exp] 142 / 3e-38 AT2G29120 435 / 2e-137 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Potri.004G052500 [exp] 137 / 1e-36 AT2G29100 445 / 3e-141 GLUTAMATE RECEPTOR 2.9, glutamate receptor 2.9 (.1) Potri.004G052400 [exp] 133 / 3e-35 AT2G29100 429 / 3e-135 GLUTAMATE RECEPTOR 2.9, glutamate receptor 2.9 (.1) Potri.014G028800 [exp] 103 / 7e-25 AT5G11210 360 / 3e-112 ARABIDOPSIS THALIANA GLU, glutamate receptor 2.5 (.1) Potri.001G374700 [exp] 103 / 8e-25 AT2G29120 446 / 1e-142 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Potri.001G374300 [exp] 101 / 4e-24 AT2G29120 422 / 1e-133 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10025427 pacid=23150888 polypeptide=Lus10025427 locus=Lus10025427.g ID=Lus10025427.BGIv1.0 annot-version=v1.0 ATGCTCACCGTCAACAGGATGGGACCCGATTTCGACAGCCGGAAACAGAACAAAGTGCTCGTTGGTTGCGACAACGACTCCTTTGTCCAGGGCTACCTCG AAAACGTGCTCAATTTCCCGAAAGAAAGGAACATGATATTCGACAACGAATCGGAGTACACAAACGCCTTCGAAATCAACCAAATCGGAGCAGCTTTCCT CGAGATGCCGTACGAGAAGATCTTCATCAACAAGCATTGTGGAGAGCACACGACTACTATATCCAGGAATCACTTCGGAGGCTATGGATTCGTAAGCATT CCAGAAGGGCTCTCCGATAACAAGGGACTTCTCCGAGCAATCCTGAAACTATCGGAAAACGGGACGCTGAGGAGAATGGAACAAGATTGGTTCGGTTCGA CCCCCGAGTGCCCGCAGAACGACAGGCTAACCCTTCGCAGCTTCATGGGTCTGTTCCTCATATCCGGCGGAACATCCACCTTGTGTTTGATAGCCTTCCT GGCTAGGAGGAGGTTCCACAGCCGCGGCAGATCTCACGTTCTAGCATCGGATGAGGAGGAAGAGGCAGGGGAGACCCCATGGGTAGACGAATTTAACAGG CTGGGGAAATCCAAGAGTACGGTTCGAGCCATGACGTTTCCCACGGTGCATAGCTTACCACAACAGTGGAGGAGGAGGTGGCAATCTCTGCGTTATTCGG AACCAGATGAAGATGATGATGCATCTACGGCTACGATTGAAATGCTGAAGTTCGAAAATGACGGTATGGTGTAA
AA sequence Show only first row Show all	>Lus10025427 pacid=23150888 polypeptide=Lus10025427 locus=Lus10025427.g ID=Lus10025427.BGIv1.0 annot-version=v1.0 MLTVNRMGPDFDSRKQNKVLVGCDNDSFVQGYLENVLNFPKERNMIFDNESEYTNAFEINQIGAAFLEMPYEKIFINKHCGEHTTTISRNHFGGYGFVSI PEGLSDNKGLLRAILKLSENGTLRRMEQDWFGSTPECPQNDRLTLRSFMGLFLISGGTSTLCLIAFLARRRFHSRGRSHVLASDEEEEAGETPWVDEFNR LGKSKSTVRAMTFPTVHSLPQQWRRRWQSLRYSEPDEDDDASTATIEMLKFENDGMV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G29100		ATGLR2.9	GLUTAMATE RECEPTOR 2.9, gluta...		Lus10025427 [exp]	0	1
AT2G19070		SHT	spermidine hydroxycinnamoyl tr...		Lus10005358 [exp]	2.4	0.9726
AT2G47140		AtSDR5	short-chain dehydrogenase redu...		Lus10016178 [exp]	5.7	0.9614
					Lus10030774 [exp]	9.4	0.9476
AT3G15980			Coatomer, beta' subunit (.1.2....		Lus10002324 [exp]	9.5	0.9436
AT5G44440			FAD-binding Berberine family p...		Lus10012641 [exp]	9.9	0.9531
AT2G32390		GLR6, ATGLR3.5	glutamate receptor 3.5 (.1.2....		Lus10025426 [exp]	10.0	0.8931
AT3G15980			Coatomer, beta' subunit (.1.2....		Lus10026094 [exp]	10.7	0.9491
AT1G17860			Kunitz family trypsin and prot...		Lus10030354 [exp]	14.5	0.9331
AT2G27410	B3		Domain of unknown function (DU...		Lus10027286 [exp]	15.3	0.9336
AT2G38870			Serine protease inhibitor, pot...		Lus10018783 [exp]	18.2	0.9484

Compare expression of checked genes

Lus10025427 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.