Plant FIBer expression Database

Lus10025428 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G34040 748 / 0 Apoptosis inhibitory protein 5 (API5) (.1), Apoptosis inhibitory protein 5 (API5) (.2)
AT1G29030 709 / 0 Apoptosis inhibitory protein 5 (API5) (.1)
AT3G19515 226 / 7e-65 unknown protein
AT1G23935 164 / 2e-43 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10013953
[exp]
800 / 0 AT2G34040 763 / 0.0 Apoptosis inhibitory protein 5 (API5) (.1), Apoptosis inhibitory protein 5 (API5) (.2)
Lus10005277
[exp]
772 / 0 AT2G34040 763 / 0.0 Apoptosis inhibitory protein 5 (API5) (.1), Apoptosis inhibitory protein 5 (API5) (.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G052300
[exp]
804 / 0 AT2G34040 787 / 0.0 Apoptosis inhibitory protein 5 (API5) (.1), Apoptosis inhibitory protein 5 (API5) (.2)
Potri.011G062500
[exp]
795 / 0 AT2G34040 782 / 0.0 Apoptosis inhibitory protein 5 (API5) (.1), Apoptosis inhibitory protein 5 (API5) (.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0020 TPR PF05918 API5 Apoptosis inhibitory protein 5 (API5)
Representative CDS sequence
>Lus10025428 pacid=23150798 polypeptide=Lus10025428 locus=Lus10025428.g ID=Lus10025428.BGIv1.0 annot-version=v1.0
ATGAGCGACCTCAATGACGTATCCGATCCCATCGAGAAGCTCTACCAGTACGGCGAGCGACTCAACGAAGCTAAAGATAAATCTCAGAACGTCGCTGACT
ATCAGGGAATTATCGATACATCGAAGACCAGCTTGAAGGCGAAGCAGCTGGCGGCACAGCTCATCCCGCGCTTCTTCAAGTTCTTCCCTCAGCTCTCCAG
CCAGGCCGTTGACGCACACGTTGATTTGCTTGAGCAAGAGGATCTTCGCGTGAGGGTGCAAGCAATTCGCGGTTTGCCACTTTTCTGCAAGGACACACCT
GAATACCTGTCCAAGATCGTAGACCTTCTTGTTCAACTCCTTGCTGCAGACGTAGCTGTAGAGAGGGATGCTGTGCACCAGGCGCTCATGTCCTTGTTGA
GGCAGGACGTAAAAGCTTGTCTTACTGCCTTATTCAAGCACATTGTTGCTACTGATGAACCACCGGACGTTGTTGCTTCTATCCGAGAGATAGTGCTTAC
TTTTATAAGAGATAAGGTTTTCCCCCTCAAGGCTGAACTCTTGAGACCTCAAGAAGAGATGGAACGACATATAGCTGATCTGATTAAGACGAGTTTAGAA
GATGTCACTGGTGATGAGTTCAAGATGTTTGTGGACTTCTTGAAGAGTTTGAAAATATTTGGGGATAAAGCTCCTCCTGAGCGCACAAAGGAACTAGTTG
AGATCATTGAGGCACAGGCTGATCTAGATGCACTGTTCAATGTTGAAGATACAGATCATATTGACAGATTAATATCGTGCCTGTACATTGTTCTTCCATT
CTTCTCGAGAGGAGCATCCAGCAGCAAATTTCTCAACTATTTGAACAAGCACATTGTACCTGTTTATGATAAGCTTCCGGAAGAACGCAAGCTTGATTTA
CTGAAAGCTCTGACGGAAATCTCTCCATTTACAACTCCATCAGATTCACGCCAGATTCTCCCTTCGATTGTTCAGCTTTTGAAGAAGTACATGCCACGAA
GAAAAACAGGGGAAGAGACAAACTTCACTTATGTTGAGTGCTTATTATATGCTTTTCACCATTTCGCTCACAAGGCTCCCAATGCCACAAACAGTCTATG
TGGTTACAAGATAGTAACTGGCCAGCCATCAGATAGACTGGGAGAGGACTTCTCGGAACTCAACAAAGACTTCATGGAGAGGTTGACTACTGTAGAGGAC
CTCACGAAGGTTACGATGAAGAATTTAACACAGGGAATGGCGGATCATACTAAAGCAATGTCGGGAGCGAAGTCCGATGAAGCAAAAGAAGCAATTAAAA
TTCAGAAACACAACACAACAACTGGATTAAGAACCTGCAATAATATCTTGGCCATGACCAAGCCTTTGCATGCAAAAGTGCCTTCATTTATTGGAGATAA
GAAGATTAACATTTCTTGGAAAGAAGCAACGAAACCTCCAGCTCCTTCCAACGCCGGATTAACAGGAGGCAAGCGATCTTGGGCCAATGGATCAGAGAAC
ATGGCAAAGAAGGCACGAGGTGCTGGTAGCCCTCATAACCAACTCGTTAATCGGGCATTTGAAGGCATAGGGCGAGGTAGGGGTAGAGGGTGGGGTGGCC
GTGGAAGAGGCAGAGGTTTTCGGTAG
AA sequence
>Lus10025428 pacid=23150798 polypeptide=Lus10025428 locus=Lus10025428.g ID=Lus10025428.BGIv1.0 annot-version=v1.0
MSDLNDVSDPIEKLYQYGERLNEAKDKSQNVADYQGIIDTSKTSLKAKQLAAQLIPRFFKFFPQLSSQAVDAHVDLLEQEDLRVRVQAIRGLPLFCKDTP
EYLSKIVDLLVQLLAADVAVERDAVHQALMSLLRQDVKACLTALFKHIVATDEPPDVVASIREIVLTFIRDKVFPLKAELLRPQEEMERHIADLIKTSLE
DVTGDEFKMFVDFLKSLKIFGDKAPPERTKELVEIIEAQADLDALFNVEDTDHIDRLISCLYIVLPFFSRGASSSKFLNYLNKHIVPVYDKLPEERKLDL
LKALTEISPFTTPSDSRQILPSIVQLLKKYMPRRKTGEETNFTYVECLLYAFHHFAHKAPNATNSLCGYKIVTGQPSDRLGEDFSELNKDFMERLTTVED
LTKVTMKNLTQGMADHTKAMSGAKSDEAKEAIKIQKHNTTTGLRTCNNILAMTKPLHAKVPSFIGDKKINISWKEATKPPAPSNAGLTGGKRSWANGSEN
MAKKARGAGSPHNQLVNRAFEGIGRGRGRGWGGRGRGRGFR

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G34040 Apoptosis inhibitory protein 5... Lus10025428
[exp]
0 1
AT3G23910 unknown protein Lus10016653
[exp]
6.9 0.7158
AT1G13890 ATSNAP30, SNAP3... soluble N-ethylmaleimide-sensi... Lus10026653
[exp]
22.5 0.7680
AT5G14710 unknown protein Lus10014543
[exp]
24.0 0.7416
AT5G16890 Exostosin family protein (.1) Lus10013787
[exp]
26.7 0.6939
AT3G08990 Yippee family putative zinc-bi... Lus10035531
[exp]
29.0 0.7277
AT3G02220 unknown protein Lus10043249
[exp]
29.1 0.7668
AT5G02390 DAU1 DUO1-activated unknown 1, Prot... Lus10016715
[exp]
29.2 0.7675
AT5G27430 Signal peptidase subunit (.1) Lus10040138
[exp]
29.4 0.7505
AT3G44010 Ribosomal protein S14p/S29e fa... Lus10039155
[exp]
47.8 0.7318
AT5G08560 transducin family protein / WD... Lus10001412
[exp]
47.8 0.7421

Lus10025428 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.