Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60860 422 / 1e-152 AtRABA1f RAB GTPase homolog A1F (.1) AT3G15060 406 / 2e-146 AtRABA1g RAB GTPase homolog A1G (.1) AT1G28550 391 / 1e-140 AtRABA1i RAB GTPase homolog A1I (.1) AT2G33870 387 / 1e-138 ArRABA1h RAB GTPase homolog A1H (.1) AT4G18430 383 / 2e-137 AtRABA1e RAB GTPase homolog A1E (.1) AT4G18800 357 / 5e-127 AthSGBP, AtRab11B, AtRABA1d RAB GTPase homolog A1D (.1) AT5G45750 350 / 2e-124 AtRABA1c RAB GTPase homolog A1C (.1) AT1G16920 338 / 1e-119 ATRABA4B, RAB11, ATRABA1B RAB GTPase homolog A1B (.1) AT1G06400 333 / 1e-117 ARA2, AtRABA1a, AtRab11E, Ara-2 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A1A, Ras-related small GTP-binding family protein (.1) AT1G09630 311 / 5e-109 ATRAB-A2A, ATRAB11C, ATRABA2A ARABIDOPSIS RAB GTPASE A2A, RAB GTPase 11C (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015297 [exp] 434 / 2e-157 AT5G60860 428 / 6e-155 RAB GTPase homolog A1F (.1) Lus10013961 [exp] 419 / 2e-151 AT5G60860 412 / 7e-149 RAB GTPase homolog A1F (.1) Lus10017679 [exp] 417 / 2e-150 AT5G60860 426 / 4e-154 RAB GTPase homolog A1F (.1) Lus10002178 [exp] 416 / 2e-150 AT5G60860 423 / 4e-153 RAB GTPase homolog A1F (.1) Lus10039895 [exp] 390 / 3e-140 AT5G60860 397 / 5e-143 RAB GTPase homolog A1F (.1) Lus10029253 [exp] 356 / 1e-126 AT5G45750 393 / 4e-141 RAB GTPase homolog A1C (.1) Lus10007306 [exp] 353 / 2e-125 AT5G45750 387 / 5e-139 RAB GTPase homolog A1C (.1) Lus10020746 [exp] 323 / 2e-113 AT1G06400 375 / 3e-134 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A1A, Ras-related small GTP-binding family protein (.1) Lus10029789 [exp] 322 / 3e-113 AT1G06400 373 / 3e-133 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A1A, Ras-related small GTP-binding family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G123600 [exp] 412 / 9e-149 AT5G60860 419 / 2e-151 RAB GTPase homolog A1F (.1) Potri.019G092500 [exp] 411 / 2e-148 AT5G60860 419 / 2e-151 RAB GTPase homolog A1F (.1) Potri.011G061300 [exp] 409 / 2e-147 AT5G60860 416 / 5e-150 RAB GTPase homolog A1F (.1) Potri.001G374000 [exp] 402 / 5e-145 AT5G60860 417 / 1e-150 RAB GTPase homolog A1F (.1) Potri.011G070300 [exp] 354 / 7e-126 AT5G45750 392 / 1e-140 RAB GTPase homolog A1C (.1) Potri.004G061000 [exp] 352 / 4e-125 AT4G18800 392 / 9e-141 RAB GTPase homolog A1D (.1) Potri.003G004100 [exp] 315 / 3e-110 AT1G09630 382 / 6e-137 ARABIDOPSIS RAB GTPASE A2A, RAB GTPase 11C (.1) Potri.008G061300 [exp] 302 / 4e-105 AT1G07410 367 / 9e-131 ARABIDOPSIS RAB GTPASE HOMOLOG A2B, RAB GTPase homolog A2B (.1) Potri.006G000300 [exp] 300 / 1e-104 AT1G07410 400 / 4e-144 ARABIDOPSIS RAB GTPASE HOMOLOG A2B, RAB GTPase homolog A2B (.1) Potri.010G197200 [exp] 300 / 3e-104 AT1G07410 370 / 3e-132 ARABIDOPSIS RAB GTPASE HOMOLOG A2B, RAB GTPase homolog A2B (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00071 [flax] [poplar] Ras Ras family
Representative CDS sequence Show only first row Show all	>Lus10025432 pacid=23150780 polypeptide=Lus10025432 locus=Lus10025432.g ID=Lus10025432.BGIv1.0 annot-version=v1.0 ATGGCGTACAGAGCGGACGACGATTACGACTACTTGTTCAAGGTGGTGTTGATCGGCGACTCCGGCGTCGGAAAGTCCAACCTCCTGTCGCGTTTCACGA GGAACGAGTTCAGCCTTGAATCCAAATCGACGATCGGCGTCGAGTTCGCCACGAGGAGCATTCACGTCGACGACAAGGTCGTCAAGGCTCAGATTTGGGA CACCGCCGGCCAGGAAAGGTACCGAGCAATAACGAGTGCATACTACCGAGGCGCAGTCGGAGCACTCCTGGTGTATGATGTGACCCGCCACGTCACGTTC GAGAACGTCGAGAGGTGGCTAAAGGAGCTCCGAGACCACACCGACACCAACATAGTGATCATGCTCGTCGGGAATAAGGCCGACCTCCGCCACCTGCGGG CGGTCTCGACCGAGGACTCCAAGTCGTTCGCCGAGAGGGAGAACACCTTCTTCATGGAAACGTCCGCTCTCGAGTCCATGAACGTCGAGAACGCGTTCAC CGAGGTGCTCACCCAGATCTACCGTGTCGTCGGCAGCAAGGCTCTCGACATCGGGGACGATCCCGCGGCCTTGCCGAGGGGGCAGACGATCAACGTCGGC GGTAAAGATGACGTGTCTGCTGTCAAGAAAGCTGGCTGCTGCTCTTCTTAA
AA sequence Show only first row Show all	>Lus10025432 pacid=23150780 polypeptide=Lus10025432 locus=Lus10025432.g ID=Lus10025432.BGIv1.0 annot-version=v1.0 MAYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIHVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTF ENVERWLKELRDHTDTNIVIMLVGNKADLRHLRAVSTEDSKSFAERENTFFMETSALESMNVENAFTEVLTQIYRVVGSKALDIGDDPAALPRGQTINVG GKDDVSAVKKAGCCSS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G60860		AtRABA1f	RAB GTPase homolog A1F (.1)		Lus10025432 [exp]	0	1
AT2G31040			ATP synthase protein I -relate...		Lus10029836 [exp]	6.3	0.8302
					Lus10014040 [exp]	8.5	0.8022
AT5G23240			DNAJ heat shock N-terminal dom...		Lus10040990 [exp]	12.5	0.8074
AT1G08500		AtENODL18	early nodulin-like protein 18 ...		Lus10036067 [exp]	25.1	0.8034
AT3G02690			nodulin MtN21 /EamA-like trans...		Lus10031371 [exp]	26.8	0.8037
AT1G02910		LPA1	LOW PSII ACCUMULATION1, tetrat...		Lus10036345 [exp]	30.7	0.7614
AT5G60850	DOF	OBP4, AtDof5. 4	OBF binding protein 4 (.1)		Lus10017882 [exp]	31.1	0.7845
AT3G46970		ATPHS2, PHS2	Arabidopsis thaliana alpha-glu...		Lus10001200 [exp]	35.6	0.7856
AT1G70820			phosphoglucomutase, putative /...		Lus10015835 [exp]	35.9	0.7979
AT4G13250		NYC1, NYC	NON-YELLOW COLORING 1, NAD(P)-...		Lus10023644 [exp]	39.2	0.7699

Compare expression of checked genes

Lus10025432 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.