Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20160 197 / 1e-63 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1.2.3) AT4G22380 197 / 2e-63 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1) AT4G12600 194 / 4e-62 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1.2) AT5G46020 145 / 5e-43 unknown protein AT5G08180 59 / 2e-10 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015295 [exp] 415 / 6e-147 AT4G22380 217 / 7e-72 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1) Lus10017031 [exp] 209 / 3e-68 AT4G22380 220 / 2e-75 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1) Lus10019420 [exp] 206 / 4e-64 AT5G55190 443 / 8e-159 RAN GTPase 3 (.1) Lus10043276 [exp] 206 / 8e-64 AT5G55190 428 / 9e-153 RAN GTPase 3 (.1) Lus10000421 [exp] 54 / 1e-08 AT5G08180 240 / 9e-83 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1.2) Lus10010993 [exp] 54 / 2e-08 AT5G08180 229 / 3e-78 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1.2) Lus10040161 [exp] 52 / 4e-08 AT5G08180 226 / 4e-77 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1.2) Lus10004366 [exp] 52 / 4e-08 AT5G08180 227 / 1e-77 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G116800 [exp] 206 / 7e-67 AT4G12600 216 / 3e-74 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1.2) Potri.019G087100 [exp] 201 / 3e-65 AT4G12600 213 / 9e-73 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1.2) Potri.004G051100 [exp] 186 / 1e-58 AT5G46020 153 / 4e-48 unknown protein Potri.011G060800 [exp] 182 / 2e-57 AT5G46020 130 / 4e-39 unknown protein Potri.008G110100 [exp] 55 / 4e-09 AT5G08180 225 / 8e-77 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0101 [flax] [poplar] PELOTA PF01248 [flax] [poplar] Ribosomal_L7Ae Ribosomal protein L7Ae/L30e/S12e/Gadd45 family CL0101 [flax] [poplar] PF10252 [flax] [poplar] PP28 Casein kinase substrate phosphoprotein PP28
Representative CDS sequence Show only first row Show all	>Lus10025435 pacid=23150828 polypeptide=Lus10025435 locus=Lus10025435.g ID=Lus10025435.BGIv1.0 annot-version=v1.0 ATGGGTAGAGGAAAGTTCAAGGGGAAGCCTACTGGCCACCGCCACTTCTCGACTCCTGAAGAGATGCTTGCTGGAAGCTCTTCACGTCCGAAAACGTTCA AACGGGTGGAAGCTGAATATGAGGAGGCGGAGAAAGCTGAAGAAGAATCAGGAGAGGAGTCTGGAGAGGAATCTGGAGATGAAGCAACCGATGAGAAGAG GAAAGGTACTCAGGGTCTCATCCAGATTGAGAATCCAAACATCTCAAAGCCGAAGAATATCAAGGCGAGAGACCTTGATTTCGGGAAAACAACAGAACTT TCGCGGCGTGAAAGGGAGGAAATAGAGAAGCAGAGAGCACATGAGCGATACATGAGGCTGCAAGAGCAAGGCAAAACAGAACAAGCAAGGAAGGATTTAG AGCGATTGACTCTGATTCGCCAGCAGAGGGCTGAAGCTGCTAAGAAGCGAGAAGAGGAAAAGGCTGTTATTTTGAGCTCGTTAAGGCGATCGAGTAGGGC CGATTGCTGGGCAATTGTGGGTAGGGGTAGGATACGATCACGATGGTTAAAGGCTGGAGAAGCTGTGAACCCGAAAGCCTACCCGCTGGCTGATGCTCAG CTGACAATCACCATTCTCGACCTCGTTCAACAAGCTGCTAACTACAAGCAACTCAAGAAGGGAGCGAATGAAGCTACCAAGACATTGAATAGGGGAATCT CAGAGTTCGTGGTCATGGCTGCGGATACTGAGCCGCTCGAGATCCTTCTCCACCTCCCTTTGCTTGCTGAGGATAAGAACGTGCCATATGTGTTTGTGCC GTCAAAGCAAGCTCTAGGAAGAGCATGCGGTGTGACAAGAGCGGTCATTGCTTGTTCCGTGACGACGAACGAAGGAAGTCAGTTGAAGTCTCAGATTCAA CAACTGAAGGTATTTGGTGTTCCTTCCCTCCAAGATGATATGATATTTCTACTAATTTGA
AA sequence Show only first row Show all	>Lus10025435 pacid=23150828 polypeptide=Lus10025435 locus=Lus10025435.g ID=Lus10025435.BGIv1.0 annot-version=v1.0 MGRGKFKGKPTGHRHFSTPEEMLAGSSSRPKTFKRVEAEYEEAEKAEEESGEESGEESGDEATDEKRKGTQGLIQIENPNISKPKNIKARDLDFGKTTEL SRREREEIEKQRAHERYMRLQEQGKTEQARKDLERLTLIRQQRAEAAKKREEEKAVILSSLRRSSRADCWAIVGRGRIRSRWLKAGEAVNPKAYPLADAQ LTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRAVIACSVTTNEGSQLKSQIQ QLKVFGVPSLQDDMIFLLI

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G22380			Ribosomal protein L7Ae/L30e/S1...		Lus10025435 [exp]	0	1
AT2G02570			nucleic acid binding;RNA bindi...		Lus10024458 [exp]	1.0	0.9283
AT3G18760			Translation elongation factor...		Lus10038301 [exp]	1.4	0.9150
AT3G13200		EMB2769	EMBRYO DEFECTIVE 2769, Cwf15 /...		Lus10022566 [exp]	3.0	0.9105
AT5G14930		GENE101, SAG101	senescence-associated gene 101...		Lus10011697 [exp]	4.2	0.8782
AT5G09830			BolA-like family protein (.1)		Lus10020861 [exp]	7.5	0.8810
AT5G59140			BTB/POZ domain-containing prot...		Lus10016485 [exp]	7.7	0.8741
AT2G21150		XCT	XAP5 CIRCADIAN TIMEKEEPER, XAP...		Lus10012170 [exp]	9.2	0.9048
AT2G29540		ATRPAC14, ATRPC...	RNApolymerase 14 kDa subunit (...		Lus10040717 [exp]	10.5	0.8612
AT3G62450			unknown protein		Lus10021958 [exp]	11.4	0.8560
AT4G10920		KELP	transcriptional coactivator p1...		Lus10023061 [exp]	11.8	0.8972

Compare expression of checked genes

Lus10025435 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.