Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G28530 204 / 4e-61 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015294 [exp] 501 / 2e-176 AT1G28530 556 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G051000 [exp] 272 / 5e-87 AT1G28530 676 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10025436 pacid=23150808 polypeptide=Lus10025436 locus=Lus10025436.g ID=Lus10025436.BGIv1.0 annot-version=v1.0 ATGGGGGAATTTAGCAGTATGAAAAGGAACCAGGGTTACAAATGGTGGACACCCTCAGCATATGCTAAGTTACAAGGCCGTGGTGGCTCTGATTTCAGCG CTTGGACGAGTGAGTTTGTCGCCATTTATCGGCTGATAGTTGATGCTGACAAACTCGGGGATGTCAAATTTGATGGGTGGGCGAAGTTGCCAGACAATAA GTTTGAGGTTTTTCTAACACACTCCCAAATGAAGAAGTCTGGAATGATGAAAACCCTTTCACCAGTCTTTGCAAGTGGAGTATGCCTTGTTACGTTAGCG GCTCTGAGTCAGTTTGATTCCTCTTTGCTTCGTCAAGGACATAAGCATCCTCAACAACATACATCTCTTTTGGCGTCTGAAACGGAGTACATAACGAATG AATCTGCGGATCCAGAGCAATTGGATAAGCTTTGTGTCTCGGTAATCAAACGGATAAAGGATGCCTATAACTGGCCTGAAGATATACTGACAGACCCCAA TTCGGGTGCTTGGATTAGTGAAATATCTGACTACCTGAAAATGAGCATGACTTCTGAATCCAAATCCGAAGCACCATCAACGACTCTCGAAACCATGCAA GACATCGATGAAAAGGTTAAATCATCCGTGCAAGACATTGCTAGCTACCAGCCGACAAGTGGAGTAGGTGTGGTGAACCAGTGGGCAGCCAATCCTTTGG CCAATGAACTCTATGGCGGAAGAAAGCTTTCACCCAAACTAGATATCATCGAGCCGCGGCTGAAGGTGAAGCTTCCGGACGAGGTAGTTATGATCGAGCT GTTGATGTCTACGGTTAAGGATGCTCATTTTGCATTGGCACGGCCGTTCAAATGA
AA sequence Show only first row Show all	>Lus10025436 pacid=23150808 polypeptide=Lus10025436 locus=Lus10025436.g ID=Lus10025436.BGIv1.0 annot-version=v1.0 MGEFSSMKRNQGYKWWTPSAYAKLQGRGGSDFSAWTSEFVAIYRLIVDADKLGDVKFDGWAKLPDNKFEVFLTHSQMKKSGMMKTLSPVFASGVCLVTLA ALSQFDSSLLRQGHKHPQQHTSLLASETEYITNESADPEQLDKLCVSVIKRIKDAYNWPEDILTDPNSGAWISEISDYLKMSMTSESKSEAPSTTLETMQ DIDEKVKSSVQDIASYQPTSGVGVVNQWAANPLANELYGGRKLSPKLDIIEPRLKVKLPDEVVMIELLMSTVKDAHFALARPFK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G28530			unknown protein		Lus10025436 [exp]	0	1
AT1G17690		NOF1	nucleolar factor 1, unknown pr...		Lus10014835 [exp]	15.8	0.8260
AT1G49980			DNA/RNA polymerases superfamil...		Lus10020986 [exp]	15.9	0.8090
AT1G77620			P-loop containing nucleoside t...		Lus10035108 [exp]	22.5	0.8248
					Lus10021271 [exp]	24.8	0.8072
AT3G10540			3-phosphoinositide-dependent p...		Lus10038647 [exp]	33.0	0.7899
AT1G77580			Plant protein of unknown funct...		Lus10029679 [exp]	37.1	0.8213
AT2G17250		EMB2762	EMBRYO DEFECTIVE 2762, CCAAT-b...		Lus10001388 [exp]	37.5	0.7719
AT2G26760		CYCB1;4, CYC3	Cyclin B1;4 (.1)		Lus10036080 [exp]	45.7	0.8197
AT3G63510			FMN-linked oxidoreductases sup...		Lus10029508 [exp]	53.2	0.7693
AT2G28470		BGAL8	beta-galactosidase 8 (.1.2)		Lus10006733 [exp]	53.4	0.8047

Compare expression of checked genes

Lus10025436 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.