Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G65360 271 / 9e-96 Histone superfamily protein (.1) AT5G10400 271 / 9e-96 Histone superfamily protein (.1) AT5G10390 271 / 9e-96 Histone superfamily protein (.1) AT3G27360 271 / 9e-96 Histone superfamily protein (.1) AT1G09200 271 / 9e-96 Histone superfamily protein (.1) AT4G40040 266 / 2e-93 Histone superfamily protein (.1.2) AT4G40030 266 / 2e-93 Histone superfamily protein (.1.2.3) AT5G10980 266 / 2e-93 Histone superfamily protein (.1) AT5G65350 260 / 3e-91 HTR11 histone 3 11 (.1) AT1G75600 257 / 7e-90 Histone superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031822 [exp] 273 / 4e-96 AT5G10400 271 / 1e-95 Histone superfamily protein (.1) Lus10005271 [exp] 273 / 4e-96 AT1G09200 271 / 1e-95 Histone superfamily protein (.1) Lus10005270 [exp] 273 / 4e-96 AT1G09200 271 / 1e-95 Histone superfamily protein (.1) Lus10031250 [exp] 273 / 4e-96 AT1G09200 271 / 1e-95 Histone superfamily protein (.1) Lus10012744 [exp] 273 / 5e-96 AT5G65360 271 / 2e-95 Histone superfamily protein (.1) Lus10031821 [exp] 275 / 6e-96 AT3G27360 273 / 3e-95 Histone superfamily protein (.1) Lus10013948 [exp] 274 / 1e-95 AT3G27360 272 / 7e-95 Histone superfamily protein (.1) Lus10031252 [exp] 270 / 4e-95 AT3G27360 268 / 2e-94 Histone superfamily protein (.1) Lus10012757 [exp] 221 / 7e-76 AT4G40030 229 / 3e-79 Histone superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G233900 [exp] 273 / 3e-96 AT5G65360 271 / 1e-95 Histone superfamily protein (.1) Potri.014G096900 [exp] 271 / 9e-96 AT5G65360 235 / 3e-81 Histone superfamily protein (.1) Potri.002G028800 [exp] 271 / 9e-96 AT5G65360 235 / 3e-81 Histone superfamily protein (.1) Potri.003G210100 [exp] 271 / 9e-96 AT5G65360 235 / 3e-81 Histone superfamily protein (.1) Potri.003G207852 [exp] 271 / 9e-96 AT5G65360 235 / 3e-81 Histone superfamily protein (.1) Potri.003G207700 [exp] 271 / 9e-96 AT5G65360 235 / 3e-81 Histone superfamily protein (.1) Potri.001G016700 [exp] 271 / 9e-96 AT5G65360 235 / 3e-81 Histone superfamily protein (.1) Potri.001G016900 [exp] 271 / 9e-96 AT5G65360 235 / 3e-81 Histone superfamily protein (.1) Potri.007G096700 [exp] 266 / 2e-93 AT5G10980 274 / 1e-96 Histone superfamily protein (.1) Potri.007G014300 [exp] 266 / 2e-93 AT5G10980 274 / 1e-96 Histone superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0012 [flax] [poplar] Histone PF00125 [flax] [poplar] Histone Core histone H2A/H2B/H3/H4
Representative CDS sequence Show only first row Show all	>Lus10025439 pacid=23150779 polypeptide=Lus10025439 locus=Lus10025439.g ID=Lus10025439.BGIv1.0 annot-version=v1.0 ATGGCACGCACCAAGCAGACAGCCCGCAAGTCCACCGGCGGCAAGGCGCCACGCAAGCAGCTAGCAACAAAAGCCGCAAGGAAATCAGCTCCTGCGACGG GCGGAGTCAAGAAGCCCCACAGATTCAGGCCAGGAACCGTCGCCCTCCGCGAGATCCGCAAGTACCAGAAGAGCACTGAGCTCCTCATCCGCAAGCTCCC CTTTCAACGCCTAGTTCGTGAGATCGCCCAGGATTTCAAGACCGATCTCAGGTTCCAGAGCTCCGCCGTTTCCGCTCTACAGGAGGCCGCCGAAGCTTAC CTCGTCGGGCTGTTCGAGGACACCAATCTCTGCGCTATTCACGCCAAGAGAGTCACCATCATGCCCAAGGATATCCAGCTCGCTCGTAGGATTAGAGGCG AGCGCGCTTGA
AA sequence Show only first row Show all	>Lus10025439 pacid=23150779 polypeptide=Lus10025439 locus=Lus10025439.g ID=Lus10025439.BGIv1.0 annot-version=v1.0 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAY LVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G65360			Histone superfamily protein (....		Lus10025439 [exp]	0	1
AT3G45980		H2B, HTB9	HISTONE H2B, Histone superfami...		Lus10041347 [exp]	1.7	0.9838
AT3G53730			Histone superfamily protein (....		Lus10038481 [exp]	2.8	0.9819
AT5G59690			Histone superfamily protein (....		Lus10014264 [exp]	3.5	0.9780
AT1G09200			Histone superfamily protein (....		Lus10005271 [exp]	3.9	0.9702
AT1G73620			Pathogenesis-related thaumatin...		Lus10009058 [exp]	4.5	0.9745
AT3G63030		MBD4	methyl-CPG-binding domain 4 (....		Lus10027980 [exp]	7.3	0.9439
AT3G02400	FHA		SMAD/FHA domain-containing pro...		Lus10018056 [exp]	7.7	0.9521
AT3G45980		H2B, HTB9	HISTONE H2B, Histone superfami...		Lus10017292 [exp]	7.7	0.9692
AT1G18650		PDCB3	plasmodesmata callose-binding ...		Lus10021157 [exp]	7.9	0.9653
AT4G37090			unknown protein		Lus10000742 [exp]	8.1	0.9062

Compare expression of checked genes

Lus10025439 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.