Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G04960 701 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT4G28350 562 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT3G55550 424 / 6e-139 Concanavalin A-like lectin protein kinase family protein (.1) AT4G02410 420 / 8e-138 Concanavalin A-like lectin protein kinase family protein (.1) AT4G29050 416 / 5e-136 Concanavalin A-like lectin protein kinase family protein (.1) AT3G53810 416 / 5e-136 Concanavalin A-like lectin protein kinase family protein (.1) AT2G37710 407 / 9e-133 RLK receptor lectin kinase (.1) AT1G15530 397 / 4e-129 Concanavalin A-like lectin protein kinase family protein (.1) AT4G02420 396 / 2e-128 Concanavalin A-like lectin protein kinase family protein (.1) AT1G70110 377 / 3e-121 Concanavalin A-like lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015313 [exp] 1186 / 0 AT4G04960 761 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10018602 [exp] 589 / 0 AT4G04960 642 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10003224 [exp] 436 / 1e-143 AT3G53810 781 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10010867 [exp] 433 / 2e-142 AT3G55550 714 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10016507 [exp] 430 / 2e-141 AT3G53810 705 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10024365 [exp] 422 / 3e-138 AT3G55550 711 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10029315 [exp] 418 / 1e-136 AT3G53810 758 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10008597 [exp] 416 / 7e-136 AT3G53810 771 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10035627 [exp] 411 / 2e-134 AT2G37710 755 / 0.0 receptor lectin kinase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G053100 [exp] 751 / 0 AT4G04960 735 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.004G044200 [exp] 750 / 0 AT4G04960 756 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.011G053200 [exp] 727 / 0 AT4G04960 716 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.006G088680 [exp] 455 / 3e-151 AT2G37710 787 / 0.0 receptor lectin kinase (.1) Potri.006G088600 [exp] 454 / 5e-151 AT2G37710 808 / 0.0 receptor lectin kinase (.1) Potri.006G088900 [exp] 444 / 4e-147 AT2G37710 801 / 0.0 receptor lectin kinase (.1) Potri.015G083300 [exp] 441 / 7e-146 AT1G15530 759 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.016G101000 [exp] 440 / 2e-145 AT3G55550 704 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.006G088400 [exp] 439 / 4e-145 AT2G37710 800 / 0.0 receptor lectin kinase (.1) Potri.006G088648 [exp] 432 / 9e-144 AT2G37710 710 / 0.0 receptor lectin kinase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0004 [flax] [poplar] Concanavalin PF00139 [flax] [poplar] Lectin_legB Legume lectin domain
Representative CDS sequence Show only first row Show all	>Lus10025441 pacid=23150803 polypeptide=Lus10025441 locus=Lus10025441.g ID=Lus10025441.BGIv1.0 annot-version=v1.0 ATGAACCACCGCCGGTTACCAATCACCATCCTGCTTCTCCTCCTCCTCCTCTTCTCCGAACAAATATCAGCCGTCGATTTCATCTTCAACAGATTCAACT CCACCGCCAACTCCACCACCAACCTTCTCCTCTACGGATCGGCCGCCTTCGACTCCCAAATCCTCACCCTCACCAACTCCACCACTTTCACAATCGGCCG TGCTCTGTTCCCGCAGAAGATCCGCACAAAGCCTGATCAAAACTCCTCCCATGTCCTCCCTTTCTCCACCTCATTTATCTTCGCTATGGCTCCGTACAAG GACACCTTACCGGGCCACGGACTGGTCTTGCTCTTCGCCCCATTCACCGGAATTGCGGGAGCTTCCTCTTCTCAGAACTTGGGGTTTCTGAATCGGACGA ATGACAACGATCCAAACGCTCATATATTCGGCGTTGAGTTCGACGTCTTCGCTAACCAGGAGTTCAATGACATCGATGACAACCACGTCGGCATAGATCT GAACTCGCTGACCTCCAGATTCGCGAATCCGGCAGGGTACTGGCCGGATGATTCGGGGGGAGGATCCAATTTCAAGCCGCTGAAGTTGAACAGCGGCGAG AATTACCAGGTCTGGATCGACTACCGCGAAGGATCTATGAACGTGACAATGGCGAAAGCAGGTAGTAGACGCCCGATTAGGCCGTTGCTGAACGTTTCAA TCGATTTATCGGAGGTTTTCGAGGAGGAGATGTACGTCGGATTCACTGCTGCGACTGGACGATTAGTACAGAGCCATAAGATTCTAGGGTGGAGCTTTAG CAATTCGAATTTCTCGCTCAGCGATGGACTTATAGTTACTGGATTGCCGTCGTTCGTTCTTGCGTCCGATTCTATTGTCCAATCGAAAGGATTCGTCGCG GGAATCGCTGCAGGAAGCTTTGTAGTGATCTGTATTGGAATTCTGATTGCAGTTTGGCTAATTAGGAAGAGGAGGAAGAAGAACGATGTTGAGAAAGAGG AAATGGAGGATTGGGAATTGGAATACTGGCCGCACAGGATTTCTTACCAGGAGATTGAATCGGCGACGAAAGGATTCAGTGAAGAGAACGTCATCGGAGT CGGCGGGAACGGGAAGGTGTACAAGGGAGTTCTCGCTTCCGGCGGCGGCGGTGAGTTGATCGCAGTGAAGCGTATCTCGCCGGAGAACGACGGGACGAGA GAGTTTCTTGCGGAGATTGCTAGTTTAGGGAGATTGAAGCATAGGAATCTGGTTGGATTGAGAGGATGGTGCAAAAGGGAGAAAGGATCGTTTCTATTAG TGTATGATTACATGGAGAACGGAAGCTTAGATCAGTGGATATTTGATTCCGCCGCCGGCGGAATCGGCGGTGGCGAGAAGTTTCTTAGTTGGGATGATCG GATTCGGATCCTGGCCGACGTTGCCGCCGGAATCCGGTACCTCCACCAAGGGTGGGAGGTCAAAGTTCTCCACCGTGACATCAAGGCTAGCAATGTCTTG CTAGACAAGGAAATGAACGGCCGGTTAGGCGATTTCGGGTTGGCTAGGATGCACGAGCACGGTCAAGTGGCTCGAACCACCCGAGTGGTGGGGACGGCTG GGTACTTGGCTCCAGAAGTGATTCACACCGGTCGGGTTTCGACTCAGACCGATGTGTACGGGTTCGGAATCCTGATTCTCGAAGTGGTCTCCGGAAGGAG GCCTATCGAAGGGAAAGTGACGTTGGTCGACGCGATGTGGGACCTTATGAGGGAAGGGAAGGTTATGGAATGCGCCGACCAGAGGGTTAGAGGTTCGGGC GGGGTCGATGAGGAGGAAGTGGAACGGGTGGTTCGGTTAGGGTTGGTATGTGCTCACCCTGAACCGAGTTCGCGGCCTACTATGAGGCAAGTATCGAAGG TGTTGGAAATTGCTAAGGTTGGTAGTGAGAATGAGGCGGCCGAGAGTGAGGACATGGACGCGTATTTGTTACAACGGACGAGGACGGACGTGTGGATGGA TCGATACTCGAGGAGCGATCTCGGGCACGGGTGGGGATCGCACCCGACGATGGAGGACGTTCGGCCGACGCAGTCGACATCGTCGGCTTCTGGGTCGTGG ACCACCACCATCATAGAGGGTAGGTGA
AA sequence Show only first row Show all	>Lus10025441 pacid=23150803 polypeptide=Lus10025441 locus=Lus10025441.g ID=Lus10025441.BGIv1.0 annot-version=v1.0 MNHRRLPITILLLLLLLFSEQISAVDFIFNRFNSTANSTTNLLLYGSAAFDSQILTLTNSTTFTIGRALFPQKIRTKPDQNSSHVLPFSTSFIFAMAPYK DTLPGHGLVLLFAPFTGIAGASSSQNLGFLNRTNDNDPNAHIFGVEFDVFANQEFNDIDDNHVGIDLNSLTSRFANPAGYWPDDSGGGSNFKPLKLNSGE NYQVWIDYREGSMNVTMAKAGSRRPIRPLLNVSIDLSEVFEEEMYVGFTAATGRLVQSHKILGWSFSNSNFSLSDGLIVTGLPSFVLASDSIVQSKGFVA GIAAGSFVVICIGILIAVWLIRKRRKKNDVEKEEMEDWELEYWPHRISYQEIESATKGFSEENVIGVGGNGKVYKGVLASGGGGELIAVKRISPENDGTR EFLAEIASLGRLKHRNLVGLRGWCKREKGSFLLVYDYMENGSLDQWIFDSAAGGIGGGEKFLSWDDRIRILADVAAGIRYLHQGWEVKVLHRDIKASNVL LDKEMNGRLGDFGLARMHEHGQVARTTRVVGTAGYLAPEVIHTGRVSTQTDVYGFGILILEVVSGRRPIEGKVTLVDAMWDLMREGKVMECADQRVRGSG GVDEEEVERVVRLGLVCAHPEPSSRPTMRQVSKVLEIAKVGSENEAAESEDMDAYLLQRTRTDVWMDRYSRSDLGHGWGSHPTMEDVRPTQSTSSASGSW TTTIIEGR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G04960			Concanavalin A-like lectin pro...		Lus10025441 [exp]	0	1
AT5G48790			Domain of unknown function (DU...		Lus10007599 [exp]	1.7	0.8859
AT3G25780		AOC3, AOC2	allene oxide cyclase 3 (.1)		Lus10033535 [exp]	2.0	0.8767
AT2G45760		BAL, BAP2	BON ASSOCIATION PROTEIN 1-LIKE...		Lus10036571 [exp]	2.2	0.8750
AT2G32800		AP4.3A	protein kinase family protein ...		Lus10016674 [exp]	3.2	0.8912
AT1G32100		ATPRR1	pinoresinol reductase 1 (.1)		Lus10010403 [exp]	8.1	0.8938
AT1G34300			lectin protein kinase family p...		Lus10013252 [exp]	8.5	0.8594
AT1G09890			Rhamnogalacturonate lyase fami...		Lus10042916 [exp]	9.5	0.8491
AT1G18265			Protein of unknown function, D...		Lus10020457 [exp]	11.5	0.8527
AT2G06050		AtOPR3, DDE1, O...	DELAYED DEHISCENCE 1, oxophyto...		Lus10000966 [exp]	12.0	0.8288
					Lus10039474 [exp]	18.3	0.8689

Compare expression of checked genes

Lus10025441 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.