Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58950 489 / 2e-170 Protein kinase superfamily protein (.1) AT3G46930 394 / 8e-134 Protein kinase superfamily protein (.1) AT1G62400 326 / 6e-109 HT1 high leaf temperature 1, Protein kinase superfamily protein (.1) AT4G31170 275 / 4e-88 Protein kinase superfamily protein (.1.2.3.4) AT2G24360 269 / 1e-85 Protein kinase superfamily protein (.1) AT3G27560 231 / 8e-72 ATN1 Protein kinase superfamily protein (.1) AT5G01850 227 / 1e-70 Protein kinase superfamily protein (.1) AT5G50180 226 / 8e-70 Protein kinase superfamily protein (.1) AT5G40540 222 / 2e-68 Protein kinase superfamily protein (.1) AT2G17700 228 / 3e-68 STY8 serine/threonine/tyrosine kinase 8, ACT-like protein tyrosine kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011173 [exp] 589 / 0 AT5G58950 567 / 0.0 Protein kinase superfamily protein (.1) Lus10015436 [exp] 584 / 0 AT5G58950 572 / 0.0 Protein kinase superfamily protein (.1) Lus10015314 [exp] 553 / 0 AT5G58950 318 / 1e-105 Protein kinase superfamily protein (.1) Lus10020018 [exp] 316 / 3e-104 AT1G62400 620 / 0.0 high leaf temperature 1, Protein kinase superfamily protein (.1) Lus10015541 [exp] 317 / 3e-100 AT1G62400 623 / 0.0 high leaf temperature 1, Protein kinase superfamily protein (.1) Lus10042122 [exp] 300 / 6e-98 AT1G62400 404 / 7e-141 high leaf temperature 1, Protein kinase superfamily protein (.1) Lus10020374 [exp] 275 / 7e-88 AT4G31170 697 / 0.0 Protein kinase superfamily protein (.1.2.3.4) Lus10000237 [exp] 244 / 4e-78 AT1G62400 313 / 3e-107 high leaf temperature 1, Protein kinase superfamily protein (.1) Lus10002374 [exp] 244 / 6e-78 AT1G62400 312 / 7e-107 high leaf temperature 1, Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G085300 [exp] 549 / 0 AT5G58950 604 / 0.0 Protein kinase superfamily protein (.1) Potri.005G082200 [exp] 545 / 0 AT5G58950 607 / 0.0 Protein kinase superfamily protein (.1) Potri.012G080000 [exp] 326 / 8e-109 AT1G62400 405 / 9e-142 high leaf temperature 1, Protein kinase superfamily protein (.1) Potri.011G022800 [exp] 318 / 3e-105 AT1G62400 613 / 0.0 high leaf temperature 1, Protein kinase superfamily protein (.1) Potri.015G075200 [exp] 317 / 4e-105 AT1G62400 404 / 2e-141 high leaf temperature 1, Protein kinase superfamily protein (.1) Potri.004G001900 [exp] 316 / 2e-104 AT1G62400 620 / 0.0 high leaf temperature 1, Protein kinase superfamily protein (.1) Potri.018G001800 [exp] 283 / 4e-91 AT2G24360 663 / 0.0 Protein kinase superfamily protein (.1) Potri.006G280000 [exp] 281 / 2e-90 AT4G31170 677 / 0.0 Protein kinase superfamily protein (.1.2.3.4) Potri.006G279900 [exp] 277 / 9e-89 AT2G24360 642 / 0.0 Protein kinase superfamily protein (.1) Potri.018G001900 [exp] 276 / 3e-88 AT2G24360 648 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10025442 pacid=23150840 polypeptide=Lus10025442 locus=Lus10025442.g ID=Lus10025442.BGIv1.0 annot-version=v1.0 ATGGAGGATTCGAATTCATGGCTGCGGCGGACGAAGTACTCCCACACTGTCTGCCACCGATTCGATACTTCAAAGCTCGCAGCTTACCTTTCTTCCGACG CTGCAAACGAGGTTGTTCCGATTAGGGTTTACTCGCAGATTCAGGTGAATCAGGTGATCAACAAGCAGAGATCCGTATCGCCATCGCCGCAGATCACTAA AGTTCCGGATTCGTTCAAGGATGCTAAGACGACGATCAAGAGGCGGCATTCGACTCCGAATCCTAGGAGGAGGAAGGATCATCATCATCATCAAGAGCCT AGCAGCAACGGGAAAGGAGGAGGAGGGATTATGAACAGATGGTTTCACCATGGGAAGCAGCAAGAGGAATCGTTGAAACAGCTGAAGAAGAGTAAGAGAG GTGGGAAAGTGAATTCCGTGGAGGATTCTGAAGAATGTTGTAGTAGTAGTTGTAGTGTTGATATGTCTAAGCTGTTCATTGGTTTGCGATTTGCTCATGG AGCTCACAGCAGGCTGTATCATGGGATTTACAATGATCAGCCTGTTGCTGTTAAGATTATTAGGGAGCCTGATGATGACGAAAATGGAGCTTTGGGTGTC AGGTTGAAGAACCAGTTTGATCGGGAGGTCTCTCTTTTGATCCGCCTCTCCCATCCTAATGTCATCAAGTTGGTGGCAGCTTGTAAGAAGACACCGGTAT ACTGCGTAATAACCGAGTATCTATCGGAGGGTTCACTGAGAGCATACTTGCACAAGCTAGATCACAAGTCTTTGGCTATGGAGAAGCTCATAGCTTTTGC ACTGGACATTGCTCACGGGATGGAGTATATACACTCTCACGGTGTCATCCACCGCGATCTTAAGCCGGAGAACATTCTAATCAATGAGGATTCCCACCTT AAGATTGCTGATTTCGGTATAGCCTGCGAGGAGGCCTACTGCGACAAGTTGGCCGATGACCCTGGTACCTATAGGTGGATGGCCCCAGAGATGATCAAGA AGAAATCGTACAGCCGGAAGGTCGATGTGTACGGGTTCGGGCTGATGCTATGGGAAATGGTCACCGGAACGATTCCGTACGAGGAGATGAATCCTATCCA GGCTGCTTTTGCTGTGGTAAACAAGAATTTGAGGCCGGTGGTGCCATCACATTGTCCTCCAGCACTGAAAGCCTTGATGGAGCAATGCTGGAGCTTGCAG CCGGAGAAGAGGCCGGAGTTTTGGCAGATCGTCAAGGTGTTGGAGCAATTCGAAACGTCATTAGCCACCGACGGGAACTTGAATCTGGTGAAGAGCCCGA GTGACGGCTATGATCACAAGAAGGGACTTGCTCACTGGATCCAAAAGTTAAGTCCCGCTGTTCATCATCCTCCTCCTTCGACCTCCCCAACTTCGAAACC TAAGTTCACGTGA
AA sequence Show only first row Show all	>Lus10025442 pacid=23150840 polypeptide=Lus10025442 locus=Lus10025442.g ID=Lus10025442.BGIv1.0 annot-version=v1.0 MEDSNSWLRRTKYSHTVCHRFDTSKLAAYLSSDAANEVVPIRVYSQIQVNQVINKQRSVSPSPQITKVPDSFKDAKTTIKRRHSTPNPRRRKDHHHHQEP SSNGKGGGGIMNRWFHHGKQQEESLKQLKKSKRGGKVNSVEDSEECCSSSCSVDMSKLFIGLRFAHGAHSRLYHGIYNDQPVAVKIIREPDDDENGALGV RLKNQFDREVSLLIRLSHPNVIKLVAACKKTPVYCVITEYLSEGSLRAYLHKLDHKSLAMEKLIAFALDIAHGMEYIHSHGVIHRDLKPENILINEDSHL KIADFGIACEEAYCDKLADDPGTYRWMAPEMIKKKSYSRKVDVYGFGLMLWEMVTGTIPYEEMNPIQAAFAVVNKNLRPVVPSHCPPALKALMEQCWSLQ PEKRPEFWQIVKVLEQFETSLATDGNLNLVKSPSDGYDHKKGLAHWIQKLSPAVHHPPPSTSPTSKPKFT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G58950			Protein kinase superfamily pro...		Lus10025442 [exp]	0	1
AT1G47890		AtRLP7	receptor like protein 7 (.1)		Lus10003387 [exp]	1.4	0.9322
AT1G30755			Protein of unknown function (D...		Lus10013554 [exp]	7.5	0.9258
AT1G19180	ZIM	TIFY10A, JAZ1	jasmonate-zim-domain protein 1...		Lus10039911 [exp]	8.8	0.9236
AT3G17980		AtC2	Arabidopsis thaliana C2 domain...		Lus10017629 [exp]	18.4	0.9271
AT5G13190		AtGILP	GSH-induced LITAF domain prote...		Lus10001805 [exp]	20.6	0.9261
AT5G05350			PLAC8 family protein (.1)		Lus10001260 [exp]	25.5	0.9030
AT1G01720	NAC	ATAF1, ANAC002	Arabidopsis NAC domain contain...		Lus10029692 [exp]	27.7	0.8807
AT4G14746			unknown protein		Lus10039368 [exp]	29.5	0.9180
AT3G27320			alpha/beta-Hydrolases superfam...		Lus10036931 [exp]	29.7	0.8902
AT3G56710		SIB1	sigma factor binding protein 1...		Lus10039493 [exp]	33.2	0.9059

Compare expression of checked genes

Lus10025442 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.