Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G28280 117 / 4e-33 VQ motif-containing protein (.1.2) AT2G33780 67 / 8e-14 VQ motif-containing protein (.1) AT3G15300 62 / 6e-12 VQ motif-containing protein (.1) AT5G53830 49 / 2e-07 VQ motif-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015315 [exp] 218 / 2e-72 AT1G28280 203 / 3e-65 VQ motif-containing protein (.1.2) Lus10005543 [exp] 56 / 2e-09 AT5G53830 154 / 4e-46 VQ motif-containing protein (.1) Lus10041929 [exp] 50 / 2e-07 AT1G28280 155 / 7e-47 VQ motif-containing protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G053700 [exp] 118 / 5e-33 AT1G28280 213 / 6e-69 VQ motif-containing protein (.1.2) Potri.004G044800 [exp] 117 / 2e-32 AT1G28280 223 / 1e-72 VQ motif-containing protein (.1.2) Potri.011G118200 [exp] 81 / 5e-19 AT1G28280 184 / 6e-58 VQ motif-containing protein (.1.2) Potri.001G399100 [exp] 78 / 8e-18 AT1G28280 190 / 2e-60 VQ motif-containing protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10025443 pacid=23150807 polypeptide=Lus10025443 locus=Lus10025443.g ID=Lus10025443.BGIv1.0 annot-version=v1.0 ATGCTCACCGGTTCACCCAAACCCGACCCGAAACCCGCGATCAAATCCTGCCCGATCAAGAGGAGCCAATCCTCCTCCTCCGGATTCAAGCTCTACGAGC GGAGGAACTCGCTCAAGAACCTCAGGATCAATCCGCTCAACCCTTTCCTCGCCGGATCCGGATTCCCTTCGCCCCGAAATCAACAACCCGAGATCCTCTC CCCTAGCATCCTCGATTTCCCGGCTCTAGCCCTCAGCCCCGTCACCCCCTTGATACCCGACCCGTTCGATCGATCCGGAACTTCACGATCCGGATTCGTC AGCAGTCCGATGAGTGGCGGTGCTACTCCGGCGAGCAACCTCATGGAAACGGAGGATGAGGAGGAAGAAAAGAAGGCGATTAAGGAGAGGGGATTCTATC TACACTGTTCGCCGGCGACGACGCCCAGAGAAGCGGAGCCACCGCGGTTGCTGCCGCTCTTCCCGGTGGCGTCTCCCAGAGTCGCTGCTGGTTCAGCTAG TGCTTCGTCCTGA
AA sequence Show only first row Show all	>Lus10025443 pacid=23150807 polypeptide=Lus10025443 locus=Lus10025443.g ID=Lus10025443.BGIv1.0 annot-version=v1.0 MLTGSPKPDPKPAIKSCPIKRSQSSSSGFKLYERRNSLKNLRINPLNPFLAGSGFPSPRNQQPEILSPSILDFPALALSPVTPLIPDPFDRSGTSRSGFV SSPMSGGATPASNLMETEDEEEEKKAIKERGFYLHCSPATTPREAEPPRLLPLFPVASPRVAAGSASASS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G28280			VQ motif-containing protein (....		Lus10025443 [exp]	0	1
AT1G28280			VQ motif-containing protein (....		Lus10015315 [exp]	6.9	0.6843
AT5G20130			unknown protein		Lus10037880 [exp]	13.2	0.6140
AT1G78190			Trm112p-like protein (.1)		Lus10024634 [exp]	15.5	0.6098
AT3G14180	Trihelix	ASIL2	Arabidopsis 6B-interacting pr...		Lus10025404 [exp]	29.5	0.6102
AT3G07480			2Fe-2S ferredoxin-like superfa...		Lus10020390 [exp]	30.2	0.5935
AT3G53810			Concanavalin A-like lectin pro...		Lus10001562 [exp]	31.7	0.5700
					Lus10040041 [exp]	43.5	0.5795
AT5G54680	bHLH	bHLH105, ILR3	iaa-leucine resistant3, basic ...		Lus10011167 [exp]	44.8	0.5829
AT5G49210			unknown protein		Lus10043148 [exp]	45.2	0.5519
AT1G14060			GCK domain-containing protein ...		Lus10030441 [exp]	49.1	0.5405

Compare expression of checked genes

Lus10025443 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.