Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G33800 223 / 2e-71 EMB3113 EMBRYO DEFECTIVE 3113, Ribosomal protein S5 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015317 [exp] 434 / 2e-154 AT2G33800 358 / 2e-124 EMBRYO DEFECTIVE 3113, Ribosomal protein S5 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G045700 [exp] 225 / 3e-72 AT2G33800 316 / 6e-108 EMBRYO DEFECTIVE 3113, Ribosomal protein S5 family protein (.1) Potri.011G053900 [exp] 193 / 8e-60 AT2G33800 246 / 1e-80 EMBRYO DEFECTIVE 3113, Ribosomal protein S5 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0329 [flax] [poplar] S5 PF03719 [flax] [poplar] Ribosomal_S5_C Ribosomal protein S5, C-terminal domain CL0196 [flax] [poplar] DSRM PF00333 [flax] [poplar] Ribosomal_S5 Ribosomal protein S5, N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10025445 pacid=23150892 polypeptide=Lus10025445 locus=Lus10025445.g ID=Lus10025445.BGIv1.0 annot-version=v1.0 ATGGCGGCAACAGCGTTAACACTATCATCCTCCTCTTCCATCGTCACTCTCCAGAACCCAATTCTCCGTTTCCACAATCTCAAACCAATCTCCAACCTTT CCTTCCCACAGCTCACAGCTCGATCATCACTTTCCTCCTCAAATCTAATCCCGCGAGCCTACTCCGAAGAAATCAACACCTCCAAATTCGAATCCGAATT CGAACCAGACCAGGAACCGGCCTTTGACCCGCCTACCCAACCGGACGGGTTCATCCCCGAACCATACTTCGACGACGGCCCGCTCGAGACCGATGAAGAA ATCGCCGCCGCGTATGAAGAAATCTACGGCCCAGCTTACAGCGGCGAGACCGTGCTGGGAAATGACGTTTACGTGATGGATAAGAACAAGAAAAAGCTTA CTGCGTTTGGGAAGCTGAAGAGGGAAAAGGTCAGGGATGGGTTTGAAGAGAGGGTGATTCAGGTTAGGAGAGTGACGAAAGTTGTGAAAGGCGGGAAGCA ATTGCATTTCAGAGCTGTTGTTGTTGTGGGGAATAAGCAAGGGCAAGTTGGTGTTGGAGTTGGTAAGGCGAAAGAGGTTGCTGCTGCTGTGCAGAAATCG ACTATCAATGCTCGCAGGAATATCGTTACTGTGCCATTGACCAAGTACTCCACGTTTCCTCACAGATCTGACGGGAAGTTCGGTGCAGCGACAGTGATGC TGAGGCCAGCTTGCCCTGGTTCAGGAGTGGTGGCGGGAGGAGTTGTGACGGTGGTGCTCGAATTGGCCGGAGTGAAGAATGCACTAGGGAAGCAACTAGG GAGTGACAATATCCTAAACAATGCTAGAGCCACCATTGTTGCTGTGCAGCAGATGAGGCAATTGAAAGATGTTGCTCGTGAGCGTGGTATGCCAATGGAG GCATTGTTTTATGAACCCATCACCTCCTCTTAG
AA sequence Show only first row Show all	>Lus10025445 pacid=23150892 polypeptide=Lus10025445 locus=Lus10025445.g ID=Lus10025445.BGIv1.0 annot-version=v1.0 MAATALTLSSSSSIVTLQNPILRFHNLKPISNLSFPQLTARSSLSSSNLIPRAYSEEINTSKFESEFEPDQEPAFDPPTQPDGFIPEPYFDDGPLETDEE IAAAYEEIYGPAYSGETVLGNDVYVMDKNKKKLTAFGKLKREKVRDGFEERVIQVRRVTKVVKGGKQLHFRAVVVVGNKQGQVGVGVGKAKEVAAAVQKS TINARRNIVTVPLTKYSTFPHRSDGKFGAATVMLRPACPGSGVVAGGVVTVVLELAGVKNALGKQLGSDNILNNARATIVAVQQMRQLKDVARERGMPME ALFYEPITSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G33800		EMB3113	EMBRYO DEFECTIVE 3113, Ribosom...		Lus10025445 [exp]	0	1
AT1G64510			Translation elongation factor...		Lus10032419 [exp]	1.7	0.9725
AT4G25080		CHLM	magnesium-protoporphyrin IX me...		Lus10016728 [exp]	3.9	0.9536
AT5G39530			Protein of unknown function (D...		Lus10024051 [exp]	4.9	0.9602
AT1G29070			Ribosomal protein L34 (.1)		Lus10013928 [exp]	5.7	0.9608
AT2G24090			Ribosomal protein L35 (.1)		Lus10007706 [exp]	8.4	0.9493
AT1G62780			unknown protein		Lus10024592 [exp]	8.5	0.9430
AT1G78630		EMB1473	embryo defective 1473, Ribosom...		Lus10005553 [exp]	10.2	0.9552
ATCG00900		ATCG00900.1, RP...	CHLOROPLAST RIBOSOMAL PROTEIN ...		Lus10027894 [exp]	11.2	0.9500
AT1G09900			Pentatricopeptide repeat (PPR-...		Lus10037012 [exp]	12.5	0.9301
AT3G25920		RPL15	ribosomal protein L15 (.1)		Lus10031417 [exp]	14.0	0.9420

Compare expression of checked genes

Lus10025445 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.