Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G33835 138 / 7e-34 C3HZnF FES1 FRIGIDA-ESSENTIAL 1, Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) AT3G18640 92 / 4e-19 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) AT3G26850 71 / 2e-13 histone-lysine N-methyltransferases (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015319 [exp] 1028 / 0 AT2G33835 128 / 7e-31 FRIGIDA-ESSENTIAL 1, Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Lus10002082 [exp] 92 / 7e-19 AT3G26850 214 / 1e-59 histone-lysine N-methyltransferases (.1.2) Lus10020889 [exp] 89 / 1e-17 AT3G18640 167 / 6e-43 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Lus10003846 [exp] 86 / 7e-17 AT3G18640 192 / 4e-52 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Lus10033487 [exp] 80 / 6e-15 AT3G18640 176 / 6e-46 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G056600 [exp] 323 / 1e-98 AT2G33835 151 / 2e-38 FRIGIDA-ESSENTIAL 1, Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Potri.007G107800 [exp] 99 / 6e-21 AT3G18640 142 / 8e-35 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Potri.005G061100 [exp] 98 / 9e-21 AT3G18640 140 / 2e-34 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Potri.018G051900 [exp] 83 / 4e-16 AT3G26850 168 / 4e-47 histone-lysine N-methyltransferases (.1.2) Potri.006G227200 [exp] 77 / 4e-14 AT3G26850 158 / 2e-43 histone-lysine N-methyltransferases (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0537 [flax] [poplar] CCCH_zf PF00642 [flax] [poplar] zf-CCCH Zinc finger C-x8-C-x5-C-x3-H type (and similar)
Representative CDS sequence Show only first row Show all	>Lus10025447 pacid=23150845 polypeptide=Lus10025447 locus=Lus10025447.g ID=Lus10025447.BGIv1.0 annot-version=v1.0 ATGGCGCCATCGACCTCGATTCCCGCTCGCTCCCCGGACCTATCCCGTAATGATTCCGATTCATCTGTAGAGCTAGAAGAGGTTGAAGAGTACGAGGAGG TTGAGGAGGATGATGAGCTGGAGGAGGAGGAGGTAGAAGAAGAGGAAGAAGTTGTTGAAGAAGAGGTGGAGGAGGTTGAGGAAGAAGAAGAAGAAGAAGA AGAAGAGGCGGAGGAGGTCGAGGAATATGAGGAAGTTGAAGAAGACGAAGAAGAAGAAGAGGAAGAGGAAAAAGTTGAGGAAATTCAAGAGAAGGGAAAC GAGGTGCTAGCATCAGATCAGGAGGCCAACGAGAAAACGCAAGATACCAATCAAGATATGGGTTGCGAGCAGAATGAGGGGGTATCTGTATCACAAAGTG TAGATATGGAGTGTGATGAGGATGAGGTGATATCTGTATCGATAACTGTACCTCTAGTTTCGAAAGTTGCTGCCATACCTTCTCTCATCGTTGAAGATGT TGGCTGTAATTTTGCACTACCTAGTCGTCCACTTGCCTTGCTGGCAACACAAGGTGACGATTCGGTTATAAATGGTGGTGAGTCTAAGCACCTGGAAGGT GGAAAAGAATCAAATGCTCTTGGTAATGTGAAGAATCATGTATGTGAGGATGAACGTTTGGCTACTAAGCCTTTGGAGGACTTGAGCCCAGAGGTGGGGG ATAATGTTGATATGATTCCAGAACTAGTTAAACATGCAACTGTACTGTCAGACGATGAGATCAAACAGCCAGATTCAAGATCGAGGATTCGAAGTGCATC CCCAGATCCGGAGCTAAACAATGCACATAAACGCCAGGCGATTGTATGTGACTTTTTTGCAAAAGGGTGGTGTATAAGAGGGAGTTCGTGTAAATTTCTT CATGTAAAGAACAAAACTAGCAATTCTGATGGAAAGGCTGAGGGAGATTCAGCTGTGCCAAGTTCAAGCAAAGACCAGGTTAACGAAGGCTCTACAAGCA CTAGGCCAATCGGAAGGTTGCCCGATCCTGCGAAACAAACCTTTTCTTCAACTAGAAAGGATGCCATCACATCTCGTTTTTCTTTTGATAGCCAAATGGC TGCACAGATGGGAGGAAAGCCAATATTATCGTCCCTTCAGGGAGAGGATCTATCTAGTGGAATTCCCCACAAGTCCTTCCGGAGCCTTGCATCAAACGGT GCTTCGGTTTTTTCTACTCTGATGAAAGATGTTAGAACAGAGAATCTTGCAAGAGGCTGGCCGCCTAATGAGCATGGAAGCTTGTTGTCTCCACTCAATG GAGGAAATTCCTTTTTGCTTAACAATCGCTTGCTACCAGAAAATAGATACTCTTCGAGTGGTTTGGATTTGAAGTCAAGGTTATACAACGACAAGAGTTC GAGTTCTTTATTCAACAGTTTCGACAATTCAGCCCACCTTTGGAGTGCCTATATGGATGATGATTGTGTTGGGAGTACTTCTGGTAGTGGCCGTAAACCA ATTGTTTCCTGTGACTACTGGGAACCGTCTGTGCCTTTCCAACCATCTTTTCTCATCACCCCAGTCAAGTCATCTCCTGCAAGAGAGTATGATCCTCTAC GTGACAGCATCGACTCACCAAATGGGATAGTCAAAACCTTTGAGTTCTCTTTCATTAACAACAGAAACTCCACCCGGAATGCTCCAAATCAAACAGTAAA AGATCATAACTTCCCGAGTCGGACCATTGGCCACGAAGTGAACGATGAGAGAAGTTCCATACCTCATCATAACAGATTCCACGGGAGCACGTCAGATAAC AATTGTGGTGCGCCTGGAAAAGAGTCCTTCAAACATGGGGTTGCGATGGACGTTGATGATTTAGCCGATGATCAGAGTGGCACCATGCCGAAAGAAGAGA TCGTGTCTGTTAGTAACCACGTCGATGCTGATCACAAACCTAGAAGTGATGGGTCAAGATGCAGAAATAAGGCAGATAGCATGGATGGTGATGGAAAGAT GGACCAGGAAGTGCATAAAGAATCGAAATACCCAAGACACTTCCGTACTGCTCTCATCGGTTTGGTTAAGGAGTTACTGAAACCAACATGGAGGGAAGGC CATCTCAGCAAGGATGCACACAACACCATAGTTAGAAAGTCTAGTGACAAGGTTCTGAGTACAATGCAACCCCATCAAGTACCAACTACCCCCGAGTCGA TTAAACATTATCTTCAGTCTTCGCGGCCGAAGCTTGAAAAACTAATAGAGGTGAGCCTCTCCAAGGTTTTGGAAAACAGTAGGGTTCTAGAGTTGAATCT CTCGGAACTGTTTATTACGTTTTTGTTTTCTCTTTCAGGGATATGCTTCCAGGTATGGGAAATCTTGACATGCTGA
AA sequence Show only first row Show all	>Lus10025447 pacid=23150845 polypeptide=Lus10025447 locus=Lus10025447.g ID=Lus10025447.BGIv1.0 annot-version=v1.0 MAPSTSIPARSPDLSRNDSDSSVELEEVEEYEEVEEDDELEEEEVEEEEEVVEEEVEEVEEEEEEEEEEAEEVEEYEEVEEDEEEEEEEEKVEEIQEKGN EVLASDQEANEKTQDTNQDMGCEQNEGVSVSQSVDMECDEDEVISVSITVPLVSKVAAIPSLIVEDVGCNFALPSRPLALLATQGDDSVINGGESKHLEG GKESNALGNVKNHVCEDERLATKPLEDLSPEVGDNVDMIPELVKHATVLSDDEIKQPDSRSRIRSASPDPELNNAHKRQAIVCDFFAKGWCIRGSSCKFL HVKNKTSNSDGKAEGDSAVPSSSKDQVNEGSTSTRPIGRLPDPAKQTFSSTRKDAITSRFSFDSQMAAQMGGKPILSSLQGEDLSSGIPHKSFRSLASNG ASVFSTLMKDVRTENLARGWPPNEHGSLLSPLNGGNSFLLNNRLLPENRYSSSGLDLKSRLYNDKSSSSLFNSFDNSAHLWSAYMDDDCVGSTSGSGRKP IVSCDYWEPSVPFQPSFLITPVKSSPAREYDPLRDSIDSPNGIVKTFEFSFINNRNSTRNAPNQTVKDHNFPSRTIGHEVNDERSSIPHHNRFHGSTSDN NCGAPGKESFKHGVAMDVDDLADDQSGTMPKEEIVSVSNHVDADHKPRSDGSRCRNKADSMDGDGKMDQEVHKESKYPRHFRTALIGLVKELLKPTWREG HLSKDAHNTIVRKSSDKVLSTMQPHQVPTTPESIKHYLQSSRPKLEKLIEVSLSKVLENSRVLELNLSELFITFLFSLSGICFQVWEILTC

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G33835	C3HZnF	FES1	FRIGIDA-ESSENTIAL 1, Zinc fing...		Lus10025447 [exp]	0	1
AT1G14650			SWAP (Suppressor-of-White-APri...		Lus10035958 [exp]	3.5	0.8789
AT3G51620			PAP/OAS1 substrate-binding dom...		Lus10006095 [exp]	5.1	0.8868
AT3G05040		HST1, HST	HASTY 1, HASTY, ARM repeat sup...		Lus10033845 [exp]	5.3	0.8980
AT5G04895			DEA(D/H)-box RNA helicase fami...		Lus10043459 [exp]	5.7	0.8837
AT1G17450			B-block binding subunit of TFI...		Lus10015661 [exp]	7.1	0.8541
AT5G19330		ARIA	ARM repeat protein interacting...		Lus10034070 [exp]	8.9	0.8789
AT5G55390		EDM2	ENHANCED DOWNY MILDEW 2 (.1.2)		Lus10023353 [exp]	11.4	0.8693
AT1G79190			ARM repeat superfamily protein...		Lus10016753 [exp]	12.0	0.8837
AT4G12750			Homeodomain-like transcription...		Lus10016078 [exp]	14.7	0.8534
AT2G36480			ENTH/VHS family protein (.1.2....		Lus10035573 [exp]	14.8	0.8227

Compare expression of checked genes

Lus10025447 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.