Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15780 84 / 3e-19 unknown protein AT1G15790 67 / 4e-14 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025452 [exp] 107 / 2e-27 AT1G15780 248 / 3e-68 unknown protein Lus10015323 [exp] 103 / 4e-26 AT1G15780 587 / 0.0 unknown protein Lus10015322 [exp] 62 / 2e-11 AT1G15780 164 / 1e-41 unknown protein Lus10015321 [exp] 52 / 3e-08 AT1G15780 78 / 5e-16 unknown protein Lus10023978 [exp] 47 / 4e-07 AT1G15780 71 / 4e-15 unknown protein Lus10012027 [exp] 45 / 1e-05 AT4G12020 102 / 2e-24 MAPK/ERK KINASE KINASE 4, MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 11, protein kinase family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G204900 [exp] 103 / 4e-26 AT1G15780 575 / 0.0 unknown protein Potri.003G025200 [exp] 93 / 4e-25 AT1G15780 139 / 2e-39 unknown protein Potri.003G012400 [exp] 99 / 1e-24 AT1G15780 557 / 2e-175 unknown protein Potri.003G028089 [exp] 99 / 1e-24 AT1G15780 223 / 5e-60 unknown protein Potri.003G026510 [exp] 91 / 4e-24 AT1G15780 160 / 2e-46 unknown protein Potri.003G014156 [exp] 81 / 7e-21 AT1G15780 110 / 4e-30 unknown protein Potri.003G028245 [exp] 81 / 7e-21 AT1G15780 110 / 4e-30 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10025448 pacid=23150894 polypeptide=Lus10025448 locus=Lus10025448.g ID=Lus10025448.BGIv1.0 annot-version=v1.0 ATGGACCAAATCACCGGAAGGAAGCAAGATCATGTGCCGCTGGTAGCAGCAGAAGCGAGAGGAGTGACGGAAAGGAGGAAGGAGATGGTTTGCGCTTTGA GATTTTTCGCTGCGAGCTTTGTTTGGGCGACGAAGATGAGATACACACTGCTAATGGAAACACACAGAATGGAAACACTGAAGATGCATCCACCTTTTTC TGGTGAAGAGGGACTGCAAGAACTAAAGAAGTTTGCTGTACGATTTGAGGAAAAGGTTTATACTGCTGCCACTAGTCAGTCTGATTATTTGCGGAAGATA TCATTGAAGATGCTTTTAATGGGGAGCAAATCACAGCTGCTTAACTCAGCAGAGTTCTCCTTTCCGGAGAAATCAGCTGTTTCTGGGAAGTCAGCTGTTA CAGACCATTCTGCAGTGTTAGTTCCAGTGGCTGACATCGCAGCAGAAGATTCTGATGCGGATTCAGTGTTGGAGGAACTGCGTCATATTCATATTTGA
AA sequence Show only first row Show all	>Lus10025448 pacid=23150894 polypeptide=Lus10025448 locus=Lus10025448.g ID=Lus10025448.BGIv1.0 annot-version=v1.0 MDQITGRKQDHVPLVAAEARGVTERRKEMVCALRFFAASFVWATKMRYTLLMETHRMETLKMHPPFSGEEGLQELKKFAVRFEEKVYTAATSQSDYLRKI SLKMLLMGSKSQLLNSAEFSFPEKSAVSGKSAVTDHSAVLVPVADIAAEDSDADSVLEELRHIHI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G15780			unknown protein		Lus10025448 [exp]	0	1
					Lus10019651 [exp]	47.3	0.5977
AT5G06530		AtABCG22, ABCG2...	Arabidopsis thaliana ATP-bindi...		Lus10015994 [exp]	50.6	0.6961
AT4G20740		EMB3131	EMBRYO DEFECTIVE 3131, Pentatr...		Lus10016361 [exp]	137.5	0.6272
AT5G27460			Tetratricopeptide repeat (TPR)...		Lus10008724 [exp]	138.0	0.6349
AT3G18310			unknown protein		Lus10027301 [exp]	154.9	0.5964

Compare expression of checked genes

Lus10025448 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.