Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15780 454 / 8e-149 unknown protein AT1G15770 155 / 2e-44 unknown protein AT2G10440 163 / 3e-44 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025452 [exp] 785 / 0 AT1G15780 248 / 3e-68 unknown protein Lus10015323 [exp] 769 / 0 AT1G15780 587 / 0.0 unknown protein Lus10026119 [exp] 71 / 6e-14 AT1G15780 128 / 3e-34 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G012400 [exp] 568 / 0 AT1G15780 557 / 2e-175 unknown protein Potri.001G204900 [exp] 555 / 0 AT1G15780 575 / 0.0 unknown protein Potri.003G014000 [exp] 207 / 1e-62 AT1G15780 157 / 2e-41 unknown protein Potri.003G025500 [exp] 177 / 2e-52 AT1G15780 128 / 1e-32 unknown protein Potri.006G031200 [exp] 187 / 3e-52 AT1G15780 242 / 1e-65 unknown protein Potri.016G028200 [exp] 183 / 8e-51 AT1G15780 252 / 4e-69 unknown protein Potri.003G028089 [exp] 178 / 2e-49 AT1G15780 223 / 5e-60 unknown protein Potri.001G033400 [exp] 174 / 4e-48 AT1G15780 238 / 3e-66 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10025450 pacid=23150838 polypeptide=Lus10025450 locus=Lus10025450.g ID=Lus10025450.BGIv1.0 annot-version=v1.0 ATGAACGACACAAATGAGATGAAGATTAGACAGGGGTTGGGGGTTGTTAAGCCAGGCAGCGTCTTTCAGCAACATCTCTCAAATGCTCAGCGAGCTGGTT ATCCCCCACAGCAGATGAAATCCGGAGCTTCCTTTCCTATTTCCTCCCCTCAAATGTTTCAAACTCCTTCGCCCCAGTTACTACAACATTCTTCTCCGCA AGTTGACCAGCAGAACCTCCATCCATCACTTCCCAAAACTGGAACTCCTCTACAGTCTGCACACTCGCCTTTTGTTGTTCCGTCTCCTTCAACTCCTTTG GCACCATCCCCTAATCCCGGCGATTCTGAAAAACCCGGCATCTCTTCACTTTCAAATGCTGGAATTTCTGGGCACCAACACCCAACTGCTGGACAAGCAC CTGCACAATCTCTTGCGATTGGCACTCCTGGGATCTCTGCTTCACCATTGCTTGCAGAGTTATCCGTTCCGGAAGGGGCAAATGGTAATGCTTTCACAAC TGTTTCTGGGAAGCCATCTGTTGCAGAGCAGCCCCTTGACCGGTTACTTAAAGCGGTGAAGTCTGCTTCTCCTCAGGCTTTGAGTGCAGCTGTGAGTGAC ATCGGTTCGGTTGTTAGTATGATCGACAGAATTGCAGGGTCTGCCCCAGGTAATGGATCTAGAGCCGCTGTGGGGGAGGATTTAGTGGCGATGACGAAAT GTCGTCTTCAAGCAAGAAATTTCATCACTCAAGATGGGATTAGTGGAACTAGAAAAATGAGGAGATTCACTAGTGCCATGCCCGTAAACGTTGTATCATC CGCTGGCGGTGGAAGTGATAGCAAGCAATGGAGCGGCGCAGAGACCTCTGATCTCGAGTCTACTGCAACATCTGGCGTTAAGAGGCCTAGGTTGGAGGCA AATCATGTATTGCTGGAAGAGATAAGGGAAATCAACCAAGGACTAATTGACACTGTGGTTGAAATTAGCGATGAGGATGTTAATCCTAACGCTGAAGGTG GGGAAGGAACTATCGTAGAGTGTTCGTACTCCGCTGTAGCCCTTAGCCCCGGTTTGAAATCGCAGTATGCTTCTGCTCAAATGTCTCCAATTCAGCCGCT CCGATTGCTCGCGCCTGTAACTTATCCAAACTGCTCTCCCATTCTACTTGACAAGTTCCCAGTTGAAGCCAGGTAA
AA sequence Show only first row Show all	>Lus10025450 pacid=23150838 polypeptide=Lus10025450 locus=Lus10025450.g ID=Lus10025450.BGIv1.0 annot-version=v1.0 MNDTNEMKIRQGLGVVKPGSVFQQHLSNAQRAGYPPQQMKSGASFPISSPQMFQTPSPQLLQHSSPQVDQQNLHPSLPKTGTPLQSAHSPFVVPSPSTPL APSPNPGDSEKPGISSLSNAGISGHQHPTAGQAPAQSLAIGTPGISASPLLAELSVPEGANGNAFTTVSGKPSVAEQPLDRLLKAVKSASPQALSAAVSD IGSVVSMIDRIAGSAPGNGSRAAVGEDLVAMTKCRLQARNFITQDGISGTRKMRRFTSAMPVNVVSSAGGGSDSKQWSGAETSDLESTATSGVKRPRLEA NHVLLEEIREINQGLIDTVVEISDEDVNPNAEGGEGTIVECSYSAVALSPGLKSQYASAQMSPIQPLRLLAPVTYPNCSPILLDKFPVEAR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G15780			unknown protein		Lus10025450 [exp]	0	1
AT1G15780			unknown protein		Lus10025452 [exp]	1.4	0.8231
AT1G01040		SIN1, EMB76, EM...	SHORT INTEGUMENTS 1, EMBRYO DE...		Lus10030177 [exp]	2.0	0.7930
AT2G22720			SPT2 chromatin protein (.1.2.3...		Lus10019243 [exp]	8.4	0.7189
AT3G13225			WW domain-containing protein (...		Lus10010579 [exp]	20.8	0.6898
AT4G01290			unknown protein		Lus10007916 [exp]	23.9	0.7046
AT3G13840	GRAS		GRAS family transcription fact...		Lus10000531 [exp]	25.5	0.7371
AT5G08020		ATRPA70B	ARABIDOPSIS THALIANA RPA70-KDA...		Lus10036312 [exp]	28.4	0.6647
AT1G20920			P-loop containing nucleoside t...		Lus10035328 [exp]	29.4	0.7622
AT1G44750		ATPUP11	purine permease 11 (.1.2.3)		Lus10019503 [exp]	32.4	0.6595
AT2G13560		NAD-ME1	NAD-dependent malic enzyme 1 (...		Lus10028642 [exp]	35.5	0.6814

Compare expression of checked genes

Lus10025450 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.