Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15780 113 / 4e-27 unknown protein AT2G10440 53 / 2e-07 unknown protein AT1G15772 47 / 8e-07 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015322 [exp] 314 / 1e-100 AT1G15780 164 / 1e-41 unknown protein Lus10015323 [exp] 158 / 5e-42 AT1G15780 587 / 0.0 unknown protein Lus10025452 [exp] 143 / 4e-37 AT1G15780 248 / 3e-68 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G012400 [exp] 131 / 5e-33 AT1G15780 557 / 2e-175 unknown protein Potri.001G204900 [exp] 116 / 5e-28 AT1G15780 575 / 0.0 unknown protein Potri.003G028089 [exp] 113 / 5e-27 AT1G15780 223 / 5e-60 unknown protein Potri.003G013000 [exp] 106 / 3e-26 AT1G15780 171 / 5e-48 unknown protein Potri.003G028401 [exp] 95 / 6e-22 AT1G15780 162 / 2e-44 unknown protein Potri.003G013300 [exp] 59 / 6e-10 AT1G15780 120 / 5e-31 unknown protein Potri.003G014000 [exp] 50 / 1e-06 AT1G15780 157 / 2e-41 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10025451 pacid=23150890 polypeptide=Lus10025451 locus=Lus10025451.g ID=Lus10025451.BGIv1.0 annot-version=v1.0 ATGGAGAGCAAATCACAGCCGCTTAACTCAGCAGGCAATGGCAGTAAACCCCCTGATCCAGGAGTTAATATGCAGGCTTCTGAGATGATGTCACCTTCTG TATATAGCTATTTGCAGAATCAGTCAGCCTCAGTCCAACAGTCAATGCAATCCATGCTTGAGCAACAATTGCAACAGCAAAAGGTGATACTGCAACAGCA GCAGCATTTTCAACAACTGATGTCTCAAATTCAGTCACGTCCGGGACAACTGCAGCAACAACTTGGTCTGAACCAGCAGATTATTTCTCTCCAAAGGGAG ATGCAACAGAGGCTACAAGCTTTAGTGCAATCAATGAACATGCAAAGCTCAGTATCATCGATGCATCCGAACAATATGTCAAACATGCAGCATGGTTTAT CCAGCCAATTGATGATGAACTCTCTCCAGGCCGGTTCTAATATCGATCCTGGACGAAGAAATGCTATGGCCTCATCACAGGGGGCTGCTATGGGATCTAT ACAACAAAACTCTTCAAGCGCTTCCCAGCAGCCAAATATTGGTGCTATGTCATCGCAAAGTGGGATGACCATGTTGCAGCAAACCCAGCATCTTCGGTCC AATCCCAATATGCTTCAACAGCAACAAGTATTGCAGTCACAGCAGTTCAAACAGCAGTTTCCACAGCGACAGATGCAGTGTCCGAACCACCAGAATATTT CGCTGCAACAGGACATGCAACAGAGGCTACAAGCTTCGGTTCAACCACAGCAGAAACTGTTACATCAATCAACGCCTCTAGATTCTACTGAGACAAATGG AGTGGAATGGCAAGAAGAAGTCTATCAAAAGATAAAAGCCATGAAGGAGATGTACTTGCCTGAACTAAATGAAATGTTCCAAAAAATTGCTACAAAGTTA GAGCAGCATGATTCACTTTCCCAGCAGCAGAAGTCGGATCAGCTTGAAAAGTTGAAGATGTTGGAGCCCATGATAAATTTCTTACAAGTACCCAAAGAAA ATGTCATTCCGAGTTTTAAAGACACGCTTGGATCCTATGAGCAACAGATTATGAGTTTCCTATCTGCAAATAGGCCGAAGCCGATGCTTCAAAGCCAGCA TCATCAGTCCAATGGGAGTATGCTTCATCAACAACAACATGTGAAGCAAGAGCATGATTAA
AA sequence Show only first row Show all	>Lus10025451 pacid=23150890 polypeptide=Lus10025451 locus=Lus10025451.g ID=Lus10025451.BGIv1.0 annot-version=v1.0 MESKSQPLNSAGNGSKPPDPGVNMQASEMMSPSVYSYLQNQSASVQQSMQSMLEQQLQQQKVILQQQQHFQQLMSQIQSRPGQLQQQLGLNQQIISLQRE MQQRLQALVQSMNMQSSVSSMHPNNMSNMQHGLSSQLMMNSLQAGSNIDPGRRNAMASSQGAAMGSIQQNSSSASQQPNIGAMSSQSGMTMLQQTQHLRS NPNMLQQQQVLQSQQFKQQFPQRQMQCPNHQNISLQQDMQQRLQASVQPQQKLLHQSTPLDSTETNGVEWQEEVYQKIKAMKEMYLPELNEMFQKIATKL EQHDSLSQQQKSDQLEKLKMLEPMINFLQVPKENVIPSFKDTLGSYEQQIMSFLSANRPKPMLQSQHHQSNGSMLHQQQHVKQEHD

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G15780			unknown protein		Lus10025451 [exp]	0	1
AT1G21150			Mitochondrial transcription te...		Lus10016552 [exp]	10.6	0.5962
AT1G08630		THA1	threonine aldolase 1 (.1.2.3.4...		Lus10000556 [exp]	10.7	0.6389
AT5G18200			UTP:galactose-1-phosphate urid...		Lus10016535 [exp]	15.9	0.5986
AT1G17120		CAT8	cationic amino acid transporte...		Lus10005574 [exp]	21.0	0.6254
AT5G27920			F-box family protein (.1)		Lus10011626 [exp]	33.6	0.5310
AT2G21340			MATE efflux family protein (.1...		Lus10042074 [exp]	38.2	0.6143
AT5G13750		ZIFL1	zinc induced facilitator-like ...		Lus10037341 [exp]	41.9	0.6219
AT2G39120		WTF9	what's this factor 9, Ubiquiti...		Lus10037979 [exp]	44.0	0.5929
AT4G10750			Phosphoenolpyruvate carboxylas...		Lus10003220 [exp]	58.6	0.5939
AT1G77760		GNR1, NIA1	nitrate reductase 1 (.1)		Lus10027270 [exp]	78.6	0.5665

Compare expression of checked genes

Lus10025451 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.