Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15780 561 / 1e-176 unknown protein AT2G10440 242 / 3e-66 unknown protein AT1G15770 152 / 1e-40 unknown protein AT1G15790 99 / 2e-23 unknown protein AT1G15772 49 / 7e-07 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015323 [exp] 1297 / 0 AT1G15780 587 / 0.0 unknown protein Lus10025450 [exp] 780 / 0 AT1G15780 454 / 8e-149 unknown protein Lus10015322 [exp] 190 / 1e-49 AT1G15780 164 / 1e-41 unknown protein Lus10025451 [exp] 171 / 7e-46 AT1G15780 137 / 6e-35 unknown protein Lus10026119 [exp] 137 / 2e-36 AT1G15780 128 / 3e-34 unknown protein Lus10025448 [exp] 102 / 1e-24 AT1G15780 80 / 9e-18 unknown protein Lus10015321 [exp] 84 / 5e-17 AT1G15780 78 / 5e-16 unknown protein Lus10023978 [exp] 79 / 5e-17 AT1G15780 71 / 4e-15 unknown protein Lus10012027 [exp] 74 / 6e-13 AT4G12020 102 / 2e-24 MAPK/ERK KINASE KINASE 4, MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 11, protein kinase family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G012400 [exp] 707 / 0 AT1G15780 557 / 2e-175 unknown protein Potri.001G204900 [exp] 685 / 0 AT1G15780 575 / 0.0 unknown protein Potri.016G028200 [exp] 284 / 2e-79 AT1G15780 252 / 4e-69 unknown protein Potri.001G033400 [exp] 275 / 2e-78 AT1G15780 238 / 3e-66 unknown protein Potri.003G028089 [exp] 273 / 1e-76 AT1G15780 223 / 5e-60 unknown protein Potri.006G031200 [exp] 263 / 1e-72 AT1G15780 242 / 1e-65 unknown protein Potri.003G014000 [exp] 207 / 6e-58 AT1G15780 157 / 2e-41 unknown protein Potri.003G013000 [exp] 185 / 3e-52 AT1G15780 171 / 5e-48 unknown protein Potri.003G025500 [exp] 177 / 8e-49 AT1G15780 128 / 1e-32 unknown protein Potri.003G026510 [exp] 165 / 3e-47 AT1G15780 160 / 2e-46 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10025452 pacid=23150788 polypeptide=Lus10025452 locus=Lus10025452.g ID=Lus10025452.BGIv1.0 annot-version=v1.0 ATGGATGGGAATAATTGGAGGCCTGCTGTTCCAGGCGGAGAAGCTGCTATGGAGGGGGGTGACTGGAGAGCTACATTGCAGACCGACTCGAGGCAGAGAA TCGTGAACAAAATAATGGAAACATTGAAGAGGCACCTACCCTTTTCTGGTCAAGAGGGACTGCAGGAACTAAAGAAAATTGCTATACGATTTGAGGAAAA GATTTATACTGCTGCCACTAGTCAGTCTGATTATTTGCGGAAGATATCATTGAAGATGCTCACAATGGAGAGCAAATCACAGCCGCTTAATTCAGCAGGC AATGTCAGTAAACCCCCTGATCCAGGAGCATCTCCTGGTATGCAGTCCCAAGTTCCCAGTCAAGGGCAACCACTTCCTATTCCATTGCCAGCTAATCAAC CTCAAGCACGCCAACAATTGATGCCTCAGAATATGCAGAACAATATGAATCCTGCCGGACTCCAAAGTTCTGCTACTTTACAAACTCCGCTTCCCCCTGT TTCTGGTATGAACCAGACTCCAATCAATGTCGCCGGCCAAAATGCTAGCATGCAGAACATGTCTAACATGGCTCAGAACCCAGTTGCAACTTCAATAGGC CAAGGGGTTTCATCGAACGTGTTTGGAAACCATCATAGACAGATTCCTGGGAGGAACCAGGTTATTGGCCAACAACAACAGCAATCACAGAGTTCTCAAC AGTATGCTTATCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGTACCAACAACAGTTGCTGATGAAGCAGAGAAATATAGCACACCCCATGATTCA GTCACAACTTCAGCAACAGCAGCAGCCACAACAAAAAGCTATGCAGGCATCACATGCTTTGGAGTCATCTCAATTCCAGCAGCCTCAGCAAAATGCTTTG CAGTCAGCTTCTATGTCTAGCCTTTCGCAGAATCAGTCATCCTCAGTCCAACAGTCAACACAATCCATGCTCAGGCAGCAACAATTTCAACAGCAGGCTG TTGGTCTTCATCAACAACCATCGTCAATGATGCAGCAGCAATTGCTATCTACCCAACAACAACCACAAGTCTTGCCAACACAGCAGCAGCAACAACAACC GCAATCAATGCATTCTCAGCAACAAATGGCGGGGCAACCGGCTAATGCTGCATCCATGCAACAACATCAGTTTGTTGGGCAACAAAACAATATGGGCGAC TCGCAGCAACAACAGAGATTGCTCAACCAGCAGGCTAATCAGCAGCAGCAACAGTCTCAACAGCAGTCTCAGCAGCAGATGGCGGCTCAGCATCAACAAC AACTGGGTTCTCAAAGTAATTTCTCAGGTCTACAGCAGCCAACACAACAGCAGTTGCTTGGAACACAGTCTGGCAACTCGAGTATGCAGAACAATCAACA TGCAGTAAATATGCTACAGCAGTCTAAGGTTCCTCTCCAGCAACAAACCCAACAGAATTCTTCTAATTTATTACCATCACAACAAGGGCAGCCGACGCAA TCATTGGCATCCCAGCAACAGCTGATGTCTCAGATTCCGTCACATCCAGGACAACTGCAGCAACAACTTGGTCAGAACCAACAGACTGCTTCGCTGCAAA GGGAGATGCAACAGAGGCTACAAGCTTCAGGGCAACCACCAGGCTCTTTGGTTCAACCACAGAATGTGGTTGATCAGCAGAAGCAGTTATATCCACCGCA AAGAGCACTTCCAGAAACATCATCAAACAATGAAAATCAACTCTTAACAATCGGTTACCCCTTTGGAGTGGTCTCCGATGTCTGGATTTATGGTGTTATG GTTGTTGATTCTGTCATATATTGCTGTCTTTGGGCGTCTCTAGATTCTACGGCACAAACTGGCCAGCCAAATGGAATGGATTGGCAAGAGGAAGTCTATC AAAAGATAAAAGCCATGAAGGAGATGTACTTGCCTGAACTAAATGAAATGTTCCTAAAAATTGCTTCAAAGTTACAGCAGCATGATTCACTTTCGCAGCA GCCTAAGTCAGATCAGCTTGAAAAGTTGAAGATGTTTAAGACTATGCTGGAGCGCATGATAAATTTCTTACAAGTACCCAAAGAAAATGTCATACCGAGT TTTAAAGACAAGCTGGGATCCTATGAGAAACAGATTATGAGTTTCCTAACTACAAATAGGCCGAAAAAGCCGATGCCTCAAATGCAACAAGGGCAACTTC ACCCTTCTCACATGCAATCTTTGCAACAAGCACCATCACAAAACCCTCAACCGCAGTCTCATGAAAATCAAATGACCCCCCAGTTGCAGCAAATGAACAT GCAAAATTCAGTATCATCGATGCATCAGAACAATATATCAAATATGCAGCAATCGATGATGAACTCTCTCCAGCCAGGTTCTAATATCGATTCTGGACAA GGAAATGCTGGGGCCTCATCACAGGGGGCTACTATGGGATCTATAAAACAAAACTCTTCAAGCGCTTCCCAGCAGGCAAATATCGGTACCATGTCCTCGC AAAGTGGGTTGACCATGTTGCAGCAAAGCCAGCATCTTCCGTCCAATCCCAATATGCTTCAACAGCAACAAGTATTGCAGTCACAGCAGTACAAACAGCA GTTTCAACAGCGACAGGTGCAACAGATACTTCATCAGCATCAACAACAACAACAACAAAGGCAGCAACAAATAAATCAACAAGTAAAACAGCAGCAGCAG CAGCTACCTACACAGTTGCAGACACAACAAATGTCACAGTTACATCAGATGAACGACACAAATGAGATGAAGATTAGACAGGGGTTGGGGGTTGTTAAGC CAGGCAGCGTCTTTCAGCAACATCTCTCAAATGCTCAGCGAGCTGGTTATCCCCCACAGCAGATGAAATCCGGAGCTTCCTTTCCTATTTCCTCCCCTCA AATGTTTCAAACTCCTTCGCCCCAGTTACTACAACATTCTTCTCCGCAAGTTGACCAGCAGAACCTCCATCCATCACTTCCCAAAACTGGAACTCCTCTA CAGTCTGCACACTCGCCTTTTGTTGTTCCGTCTCCTTCAACTCCTTTGGCACCATCCCCTAATCCCGGCGATTCTGAAAAACCCGGCATCTCTTCACTTT CAAATGCTGGAATTTCTGGGCACCAACACCCAACTGCTGGACAAGCACCTGCACAATCTCTTGCGATTGCCACTCCTGGGATCTCTGCTTCACCATTGCT TGCAGAGTTATCCGTTCCGGAAGGGGCAAATGGTAATGCTTTCACAACTGTTTCTGGGAAGCCATCTGTTGCAGAGCAGCCCCTTGACCGGTTACTTAAA GCGGTGAAGTCTGCTTCTCCTCAGGCTTTGAGTGCAGCTGTGAGTGACATCGGTTCGGTTGTTAGTATGATCGACAGAATTGCAGGGTCTGCCCCAGGTA ATGGATCTAGATCCGCTGTGGGGGAGGATTTAGTGGCGATGACGAAATGTCGTCTTCAAGCAAGAAATTTCATCACTCAAGATGGGATTAGTGGAACTAG AAAAATGAGGAGATTCACTAGTGCCATGCCCGTAAACGTTGTATCATCCGCTGGCGGTGGAAGTGATAGCAAGCAATGGAGCGGCGCAGAGACCTCTGAT CTCGAGTCTACTGCAACATCTGGCGTTAAGAGGCCTAGGTTGGAGGCAAATCATGTATTGCTGGAAGAGATAAGGGAAATCAACCAAGGACTAATTGACA CTGTGGTTGAAATTAGCGATGAGGATGTTAATCCTAGCGCTGAAGGTGGGGAAGGAACTATCGTAGAGTGTTCGTACTCCGCTGTAGCCCTTAGCCCCGG TTTGAAATCGCAGTATGCTTCTGCTCAAATGTCTCCAATTCAGCCGCTCCGATTGCTCGTGCCTGTAACTTATCCAAACTGCTCTCCCATTCTGCTTGAC AAGTTCCCAGTTGAAGCCAGCAAGGAGTATGAGGATGTATCGGGGAAAGCAAAGTCAAGGTTCAGCATATCTCTTCGTAGCCTTTCGCAGCCGATGTCGC TCGGGGAAATAGCGAGGACGTGGGACATATGTGCCCGGGCGGTGATATCGGAACACGCCCAGCAGAGCGGCGGAGGTAGCTTCAGTTCCAAGTATGGCAC CTGGGAGAACTGCTTGACCGCGGCGTAA
AA sequence Show only first row Show all	>Lus10025452 pacid=23150788 polypeptide=Lus10025452 locus=Lus10025452.g ID=Lus10025452.BGIv1.0 annot-version=v1.0 MDGNNWRPAVPGGEAAMEGGDWRATLQTDSRQRIVNKIMETLKRHLPFSGQEGLQELKKIAIRFEEKIYTAATSQSDYLRKISLKMLTMESKSQPLNSAG NVSKPPDPGASPGMQSQVPSQGQPLPIPLPANQPQARQQLMPQNMQNNMNPAGLQSSATLQTPLPPVSGMNQTPINVAGQNASMQNMSNMAQNPVATSIG QGVSSNVFGNHHRQIPGRNQVIGQQQQQSQSSQQYAYQQQQQQQQQQQQYQQQLLMKQRNIAHPMIQSQLQQQQQPQQKAMQASHALESSQFQQPQQNAL QSASMSSLSQNQSSSVQQSTQSMLRQQQFQQQAVGLHQQPSSMMQQQLLSTQQQPQVLPTQQQQQQPQSMHSQQQMAGQPANAASMQQHQFVGQQNNMGD SQQQQRLLNQQANQQQQQSQQQSQQQMAAQHQQQLGSQSNFSGLQQPTQQQLLGTQSGNSSMQNNQHAVNMLQQSKVPLQQQTQQNSSNLLPSQQGQPTQ SLASQQQLMSQIPSHPGQLQQQLGQNQQTASLQREMQQRLQASGQPPGSLVQPQNVVDQQKQLYPPQRALPETSSNNENQLLTIGYPFGVVSDVWIYGVM VVDSVIYCCLWASLDSTAQTGQPNGMDWQEEVYQKIKAMKEMYLPELNEMFLKIASKLQQHDSLSQQPKSDQLEKLKMFKTMLERMINFLQVPKENVIPS FKDKLGSYEKQIMSFLTTNRPKKPMPQMQQGQLHPSHMQSLQQAPSQNPQPQSHENQMTPQLQQMNMQNSVSSMHQNNISNMQQSMMNSLQPGSNIDSGQ GNAGASSQGATMGSIKQNSSSASQQANIGTMSSQSGLTMLQQSQHLPSNPNMLQQQQVLQSQQYKQQFQQRQVQQILHQHQQQQQQRQQQINQQVKQQQQ QLPTQLQTQQMSQLHQMNDTNEMKIRQGLGVVKPGSVFQQHLSNAQRAGYPPQQMKSGASFPISSPQMFQTPSPQLLQHSSPQVDQQNLHPSLPKTGTPL QSAHSPFVVPSPSTPLAPSPNPGDSEKPGISSLSNAGISGHQHPTAGQAPAQSLAIATPGISASPLLAELSVPEGANGNAFTTVSGKPSVAEQPLDRLLK AVKSASPQALSAAVSDIGSVVSMIDRIAGSAPGNGSRSAVGEDLVAMTKCRLQARNFITQDGISGTRKMRRFTSAMPVNVVSSAGGGSDSKQWSGAETSD LESTATSGVKRPRLEANHVLLEEIREINQGLIDTVVEISDEDVNPSAEGGEGTIVECSYSAVALSPGLKSQYASAQMSPIQPLRLLVPVTYPNCSPILLD KFPVEASKEYEDVSGKAKSRFSISLRSLSQPMSLGEIARTWDICARAVISEHAQQSGGGSFSSKYGTWENCLTAA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G15780			unknown protein		Lus10025452 [exp]	0	1
AT1G15780			unknown protein		Lus10015323 [exp]	1.0	0.8354
AT1G15780			unknown protein		Lus10025450 [exp]	1.4	0.8231
AT2G22720			SPT2 chromatin protein (.1.2.3...		Lus10019243 [exp]	2.8	0.7625
AT3G28430			unknown protein		Lus10018448 [exp]	3.0	0.7736
AT5G63120			P-loop containing nucleoside t...		Lus10043334 [exp]	4.9	0.7160
AT1G01040		SIN1, EMB76, EM...	SHORT INTEGUMENTS 1, EMBRYO DE...		Lus10030177 [exp]	6.5	0.7572
AT1G50120			unknown protein		Lus10013430 [exp]	6.7	0.7615
AT1G20670			DNA-binding bromodomain-contai...		Lus10013220 [exp]	8.9	0.7259
AT4G22960			Protein of unknown function (D...		Lus10014145 [exp]	11.7	0.7288
AT3G03380		DEG7, DEGP7	degradation of periplasmic pro...		Lus10042507 [exp]	15.5	0.6653

Compare expression of checked genes

Lus10025452 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.