Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G28380 745 / 0 NSL1 necrotic spotted lesions 1, MAC/Perforin domain-containing protein (.1) AT4G24290 580 / 0 MAC/Perforin domain-containing protein (.1.2) AT1G14780 443 / 1e-148 MAC/Perforin domain-containing protein (.1) AT1G29690 387 / 8e-128 CAD1 constitutively activated cell death 1, MAC/Perforin domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035789 [exp] 590 / 0 AT4G24290 911 / 0.0 MAC/Perforin domain-containing protein (.1.2) Lus10012717 [exp] 573 / 0 AT4G24290 764 / 0.0 MAC/Perforin domain-containing protein (.1.2) Lus10010894 [exp] 568 / 0 AT4G24290 761 / 0.0 MAC/Perforin domain-containing protein (.1.2) Lus10037363 [exp] 526 / 0 AT4G24290 837 / 0.0 MAC/Perforin domain-containing protein (.1.2) Lus10015324 [exp] 494 / 2e-170 AT4G24290 312 / 8e-100 MAC/Perforin domain-containing protein (.1.2) Lus10041285 [exp] 449 / 3e-151 AT1G14780 507 / 2e-173 MAC/Perforin domain-containing protein (.1) Lus10037426 [exp] 449 / 6e-151 AT1G14780 514 / 2e-176 MAC/Perforin domain-containing protein (.1) Lus10029279 [exp] 417 / 3e-139 AT1G29690 868 / 0.0 constitutively activated cell death 1, MAC/Perforin domain-containing protein (.1) Lus10002768 [exp] 404 / 3e-134 AT1G29690 863 / 0.0 constitutively activated cell death 1, MAC/Perforin domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G047700 [exp] 893 / 0 AT1G28380 809 / 0.0 necrotic spotted lesions 1, MAC/Perforin domain-containing protein (.1) Potri.011G057100 [exp] 881 / 0 AT1G28380 790 / 0.0 necrotic spotted lesions 1, MAC/Perforin domain-containing protein (.1) Potri.003G006500 [exp] 600 / 0 AT4G24290 922 / 0.0 MAC/Perforin domain-containing protein (.1.2) Potri.019G001000 [exp] 584 / 0 AT4G24290 780 / 0.0 MAC/Perforin domain-containing protein (.1.2) Potri.001G305600 [exp] 580 / 0 AT4G24290 783 / 0.0 MAC/Perforin domain-containing protein (.1.2) Potri.008G136401 [exp] 485 / 2e-165 AT1G14780 691 / 0.0 MAC/Perforin domain-containing protein (.1) Potri.010G104600 [exp] 484 / 3e-165 AT1G14780 697 / 0.0 MAC/Perforin domain-containing protein (.1) Potri.002G234700 [exp] 447 / 3e-150 AT1G14780 520 / 8e-179 MAC/Perforin domain-containing protein (.1) Potri.004G064000 [exp] 404 / 2e-134 AT1G29690 901 / 0.0 constitutively activated cell death 1, MAC/Perforin domain-containing protein (.1) Potri.011G075500 [exp] 400 / 1e-132 AT1G29690 890 / 0.0 constitutively activated cell death 1, MAC/Perforin domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0293 [flax] [poplar] CDC PF01823 [flax] [poplar] MACPF MAC/Perforin domain
Representative CDS sequence Show only first row Show all	>Lus10025453 pacid=23150903 polypeptide=Lus10025453 locus=Lus10025453.g ID=Lus10025453.BGIv1.0 annot-version=v1.0 ATGTCGCTCCAACGCCTTGACCCACGATGTCCGGCGAAGAAAGCGGTTTCCGTGATGGGGTTCGGGTACGATTTGTCCAACGACCTCCGGCTTTCGTCCT GCAAGCCAGGTCCGTCCGGGTCGAAGCTGCTCAAGCACGATCCGAAGATTCCCACCCGAGACTTGATGGTTCCAGGTGGGATAGTGGTTAAGGACGTCTG GAGTGGGATCAAGTGCGATAAGGGCGAACGTACTCGGTTCAGTTCCGACGTTCTGTCTTTCAATCAGATGTCGGAGAAGCTGAACCGGGAGCTGACCTTA TCGGGGAAGATCCCGACGGGGATGTTCAATTCGATGTTCGACTTCAAAGGCTGTTGGGCGAAAGACGCCGGTTCGGTCAAGTCGCTAGCCTTTGATGGAT GGTTCATCACTCTGTACAACATCGAGCTCGAACGGTCGCATTTGACCCTCTCCGAATCGGTCAAAGCCGAGGTTCCCAATTCCTGGGATCCTCAGGCGCT CGCCGAGTTTATCGAGAAGTACGGAACGCATATTGTAGTCGGGGTGAAAATGGGAGGTAAAGATGCGATCCACATCAAGCAGTTGAAAAGATCGAATCTT GATCCGACTCAAGTCCAGAAGGTGCTGAAGCAGATAGCTGATGAGAGATTTTCACAGGATTCTGAATCATCAGCTAAACCCAATGATGAAAATGCTCTGC CATTTGGAGTTCATGGATCTTATTATGCTGCTTCAATCAGGCCGCCTGTTGTCACTCCCTTAAAGAACGAGGGTTTGGTAAGTATTGAAACAAGATCGGG AGGAGTGCATGTTGGCCAAAGCCATGATCAATGGCTTCCCACAATTGTACAATCTCCCAATGCCATATCAATGTCACTTGTTCCCATTACTTCACTGTTG AGTGGTGTCCGTGGCAATGGCTTCCTAACTCATGCCGTCAATCTATACCTTCGATATAAACCACCCATAGAAGAACTCCAGCAGTTCTTAGAGTTCCAAT TACCCCGAAAATGGGCACCGATCTACAGCGACCTTCTGCTTGCTCTCCGACGGAGGAAACAAGCTTCGCCTTCTCTCCGGTTCAGCTTCATGGGTCCGAA GCTATACGTGAGCACGACAATGGTTGAATCAGGAAACAGGCCAGTGACAGGAATCAGGTTACACTTGGAAGGCAAAAGAAGTGACCATCTAGCAGTCCAT CTACAGCACCTCGCCACGGTTCCGAACTCGATCCAGCTTGAGAACGATGACCACGATAGCCACGGTGCCCACACGATCGAGCAGCCCGAACGAGGCTACC TGGAGCCCGTCAATTGGACAATATTCTCCCACATCTGCACTGCTCCCGTGCAGTATGACGGAGCTCGAATCGACGACACCGCCTCCATCGTTACCAAGGC CCGGCTCGAGGTCAAAGTCACGGGCTTAAAAAAAGTCTTGTTCTTGAGGCTCGGTTTCTCTATGGTCAAGACCGCCCGGATCCGTAGGTCCGAGTGGGAC GGACCTTCTAACACAATGTCGAGAAAATCGGGAATTTTCTCGACATTGATGATTAGTACTAAGTTTAGTACTAATAATATGAACCCAAACGAACAAGAAT TGGTGAGGAAGGTGGATATGAATTCCGCCAGTTTCCCCGGTGGACCTCCGTTACCGGTTAGGGCACCGAAAATGTCGAGTTTCGTCGACACCAAGGAGAT GGTGAGAGGTCCCGAGGATTCCCCGGGATATTGGGTCATGACTGGAGCTAAGTTATGTGTCGAGGAAGGTCGTATTTCGATCAAGGGGAAGTATTCTTTA TTGGCAATGATTTCTGAAGAATGTATGATGTTTATGTGA
AA sequence Show only first row Show all	>Lus10025453 pacid=23150903 polypeptide=Lus10025453 locus=Lus10025453.g ID=Lus10025453.BGIv1.0 annot-version=v1.0 MSLQRLDPRCPAKKAVSVMGFGYDLSNDLRLSSCKPGPSGSKLLKHDPKIPTRDLMVPGGIVVKDVWSGIKCDKGERTRFSSDVLSFNQMSEKLNRELTL SGKIPTGMFNSMFDFKGCWAKDAGSVKSLAFDGWFITLYNIELERSHLTLSESVKAEVPNSWDPQALAEFIEKYGTHIVVGVKMGGKDAIHIKQLKRSNL DPTQVQKVLKQIADERFSQDSESSAKPNDENALPFGVHGSYYAASIRPPVVTPLKNEGLVSIETRSGGVHVGQSHDQWLPTIVQSPNAISMSLVPITSLL SGVRGNGFLTHAVNLYLRYKPPIEELQQFLEFQLPRKWAPIYSDLLLALRRRKQASPSLRFSFMGPKLYVSTTMVESGNRPVTGIRLHLEGKRSDHLAVH LQHLATVPNSIQLENDDHDSHGAHTIEQPERGYLEPVNWTIFSHICTAPVQYDGARIDDTASIVTKARLEVKVTGLKKVLFLRLGFSMVKTARIRRSEWD GPSNTMSRKSGIFSTLMISTKFSTNNMNPNEQELVRKVDMNSASFPGGPPLPVRAPKMSSFVDTKEMVRGPEDSPGYWVMTGAKLCVEEGRISIKGKYSL LAMISEECMMFM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G28380		NSL1	necrotic spotted lesions 1, MA...		Lus10025453 [exp]	0	1
AT3G23230	AP2_ERF	ERF98	Integrase-type DNA-binding sup...		Lus10011831 [exp]	4.0	0.7684
AT5G57620	MYB	ATMYB36	myb domain protein 36 (.1)		Lus10011606 [exp]	11.3	0.8065
AT1G08650		ATPPCK1, PPCK1	phosphoenolpyruvate carboxylas...		Lus10042560 [exp]	15.9	0.7141
AT1G02810			Plant invertase/pectin methyle...		Lus10010309 [exp]	16.5	0.7667
AT1G31770		ABCG14	ATP-binding cassette G14, ATP-...		Lus10035692 [exp]	17.1	0.7289
AT1G03220			Eukaryotic aspartyl protease f...		Lus10034036 [exp]	22.5	0.7970
AT4G11600		LSC803, PHGPX, ...	glutathione peroxidase 6 (.1)		Lus10008022 [exp]	33.5	0.7448
AT5G04930		ALA1	aminophospholipid ATPase 1 (.1...		Lus10034872 [exp]	35.1	0.7569
AT4G15800		RALFL33	ralf-like 33 (.1)		Lus10037512 [exp]	38.3	0.7207
AT5G06900		CYP93D1	"cytochrome P450, family 93, s...		Lus10027798 [exp]	58.3	0.7093

Compare expression of checked genes

Lus10025453 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.