Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G28420 981 / 0 HD HB-1 homeobox-1 (.1) AT5G44180 482 / 5e-143 HD Homeodomain-like transcriptional regulator (.1.2) AT4G12750 160 / 2e-39 Homeodomain-like transcriptional regulator (.1) AT4G03250 71 / 4e-12 HD Homeodomain-like superfamily protein (.1) AT5G08630 58 / 7e-08 DDT domain-containing protein (.1) AT3G01460 48 / 7e-05 MBD9, ATMBD9 methyl-CPG-binding domain 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015325 [exp] 2186 / 0 AT1G28420 1273 / 0.0 homeobox-1 (.1) Lus10039870 [exp] 506 / 6e-150 AT5G44180 1398 / 0.0 Homeodomain-like transcriptional regulator (.1.2) Lus10018634 [exp] 485 / 1e-142 AT5G44180 1391 / 0.0 Homeodomain-like transcriptional regulator (.1.2) Lus10015400 [exp] 175 / 4e-49 AT1G28420 166 / 6e-47 homeobox-1 (.1) Lus10013979 [exp] 169 / 1e-46 AT1G28420 161 / 4e-45 homeobox-1 (.1) Lus10016078 [exp] 176 / 7e-44 AT4G12750 723 / 0.0 Homeodomain-like transcriptional regulator (.1) Lus10012302 [exp] 143 / 8e-34 AT4G12750 911 / 0.0 Homeodomain-like transcriptional regulator (.1) Lus10017688 [exp] 127 / 6e-32 AT5G44180 148 / 4e-40 Homeodomain-like transcriptional regulator (.1.2) Lus10033644 [exp] 124 / 7e-31 AT1G28420 148 / 4e-40 homeobox-1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G048675 [exp] 1173 / 0 AT1G28420 1266 / 0.0 homeobox-1 (.1) Potri.011G057700 [exp] 1159 / 0 AT1G28420 1262 / 0.0 homeobox-1 (.1) Potri.017G016200 [exp] 947 / 0 AT5G44180 1322 / 0.0 Homeodomain-like transcriptional regulator (.1.2) Potri.007G135500 [exp] 944 / 0 AT5G44180 1226 / 0.0 Homeodomain-like transcriptional regulator (.1.2) Potri.014G173300 [exp] 170 / 3e-42 AT4G12750 1038 / 0.0 Homeodomain-like transcriptional regulator (.1) Potri.009G071700 [exp] 71 / 5e-12 AT4G03250 303 / 5e-97 Homeodomain-like superfamily protein (.1) Potri.001G276800 [exp] 71 / 6e-12 AT4G03250 275 / 2e-86 Homeodomain-like superfamily protein (.1) Potri.019G008541 [exp] 49 / 4e-05 AT5G08630 683 / 0.0 DDT domain-containing protein (.1) Potri.004G138900 [exp] 49 / 5e-05 AT5G08630 652 / 0.0 DDT domain-containing protein (.1) Potri.007G135100 [exp] 43 / 0.0006 AT5G53980 85 / 3e-21 homeobox protein 52 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02791 [flax] [poplar] DDT DDT domain CL0123 [flax] [poplar] HTH PF00046 [flax] [poplar] Homeodomain Homeodomain
Representative CDS sequence Show only first row Show all	>Lus10025454 pacid=23150795 polypeptide=Lus10025454 locus=Lus10025454.g ID=Lus10025454.BGIv1.0 annot-version=v1.0 ATGGATTCCAATTCCGACGGAGAAGATTACCAGAACAGGAAGCCGAACAAGGGAGTCGCATCTGGCTCCGGCGGCGGCGGCGACGGCAAGCCCAAGCGTC AGATGAAGACTCCGTTCCAGCTCGAAACCCTCGAGAAAGCTTATTCTGTGGAGACATACCCAACAGAGGCCACGAGGATAGAGTTAGCTAAGAAGTTGGG ACTCACGGACAGGCAATTGCAGATGTGGTTTTGCCATAGGAGGTTGAAAGACAGAAGGGAGGAGAAGAAAGAAGAGAAGAAAGTGGAGAAGAAAGAAGAG AAGATTCCGGCAAAGAAGCCTTCTCGGAAAGCGCTGCCTATGCCGGAATCTCCTTTGGAGGATGTCAAGGCTGAAGTTCCTGATCCTGCAAGTGACTATG GATCTGGCTCAGGTTCTGGTTCCAGCCCTTATACAGATCCGAGAAGAATGCCTGTGGATGATGTGCCAATGTCGAGGGGGTATAAAGAGCCACCACAGCA GTCGGCTATTCTGGTTAGAGCTATTGCATGCGTGGAGGCTCAATTGGGGGAGCCTCTGAGGGAGGATGGTCCGATTTTAGGAATTGAGTTTGATGCATTG CCACCTGATGCTTTTGGTGCCCCGATTGCTGCTGTGGTGGAACAGCAGAAGCGCTATTCTTATGATGAGAAGATTGTTCAACGACGTGAGGGGAAATCAA AAAAGGCCTCTGGAAGAGCTCTTCATGAGTACCAGTTTCTCCAGGATCAATCCAGCAGAAGACCTGACACATATGGACAAGTTACCCAACATTCGTTCCA TGATACGCCAGCTGATACTTCAAGGAGGAGAACTTCAACGTCTGTACGTGGAGATGAACGTTTGCCCAGAGTTCACGGTATCCAAACTCCTGCGTCCCGT GTACGCCTTTTGTCTGCACACGAAGGGAAAAGTCATCTTCTTCCATCACCTCAAAGGGATGATAACTATCTTCTGCGAGCACAACCCTACCCTCAAAGTG TATTCCATGATGCCAATGTCTTCCATGGTGAAGCAGATTTTATGACACAGAAGAAACCGAAAATAAAGAATGAAGAAGCAAGACTTCGGGAAGAGGCCCA GGAAAGTCGAACGAGAAAAGAGATTGAGAAACAAGACTTACTGAGACGCAGGAATGAAGAGCGAATGAGGAAAGAAATGGAAAGGCAAGACCGTGAAAGA AAGAAGGAAGAAGAGAGACTGATCCGTGAAAGACAGCGAGATGAGGAGAAGTCATTGCGTGAACAAAAACGTGAGCTAGAAAGGAGGGAAAGGATGTTGC AGAAAGAGTATATAAGGGCTGAAAAGCAGAAGCAAAAGGACGAGCAAAGGAAAGAAAGAGAGGAAGTTAGACGCAAAGCTGCCATTGAGAAAGCAACTGC ACGGAGAATTGCCAAAGAGTCTTTGGATCTTATTGAGGATGAACAGTTGGAGCTCATGGAATTGGCTGCTGCAAATAAAGGGTTGTCCTCGATAGTTCAA CTAGACTACAATACATTGCAAACTCTTGATGCATTCAGAGATTCTTTATGCACATTCCCATCGGAGTCGATACTGTTGAAGAAGCCATTTAGTTTTCGGC CTTGGGTGGATTCAGAAGATAATGTTGGAAACCTTCTGATGATCTGGAGGTTTTGCATAACTTTTGCTGATGTTCTTGGATTATGGTCATTTACCCTTGA TGAGTTTATTCAAGCGCTTCATGACTATGATTCAAGGTTGCTGGGTGAGATACACATTAGTCTTTTGAAATTAATCATTAAGGACATTGAAGATGGTGGT AGGGCACCAACTGGATTAGGGACGAACCAGTATTCTGTAGCTAATCCTGAAGGCGGACATCCGCAGATTGTCGAAGGGGCATACATGTGGGGCTTTGACA TATGCAAGTGGCAGCAACTCTTGAATCCATTATCTTGGCCTGAAATATTGCGGGAGTTGGCACTGTCTGCAGGTTTTGGGCCACAATTGCGGGACAAGAA TGCAGCATGGAGGCACTCAAATGATGAGGCCAACCGTTACCAAGAGACAGTTTCGAATTTACGGAATGGATTAGCAGCTGAAAAAGCTTTTGCGCTGATG CGAGAAAAAGGTTTATTAAATCCACGGAAATCTAGGCACAGACTTACACCTGGAACAGTAAAATTTGCTGCTTTTCATGTTCTTTCACTTGAAGGAAGTG AGGGATTGACGTTGATAGAACTCGCAGATAAGATTCAGAAATCCGGACTTCGGGACCTCTCAACAAGCAGGACTCCAGAGGCGTCTATATCTGTTGCTTT AACTAGGGATCAGAAGCTCTTTGAAAGAGTTGCTCCTTCAACATATTGTGTGCGGGATCCTTACAGGAAGGATCCAGCAGATGGAGAGGCGATACTTGCA GAAGCAAGAAAGAAAATGCATGTTTTTGCAAATGGGTTTTTGGAGGAAGAGGATGCTGACGAGGTTGCTGATGATGTCGAACGAGATGATGATTCCGAGG CTGAAGCTGATGACGATCCTGAAGTTGATGATCTGAGTACTCCACTGCACGCCGATAAAATTGTTGGCCAAGCTAATGGAGTTCATACTCCATTCGGGAA TGACAATGATGATGAAAAAGAAAATGGTCCGACGGAAATCGAAAATGATGATCCACACATTTGGTCGTCATTAATTGTAAAGAGTGAATCTGAGAATGAT CTCTCTCGATTCCCTGAGAATGGGGCAAGAGAAACAAGTACTCCTGGTACAATTGACCAATTTGCTGATAGAAATCCCTTGGTTGGTAATGCGAAGGAAG AGAACGTTGAAATTGATGAAAGCAAGTTTGGTGAATCTTGGGTTCAAGGACTTGCAGAGGGAGAATATTCTCATCTCAGTGTTGAGGAGCGTCTTGATGC CCTTTTCAAGCTAGTTGGCATCGCAAACGAGGGTAGTATCATACGTTCTGTTCTTGAGGACCGGTTGGAAGCTGCCACTGCTCTTAAAAAACAGATGTGG GCTGAGGCGCAATCGGAAAAGAGTCATTTGAGAGATGATGTCATTCAGATACTGGAGGTACCGTCTGGTAACCCTAGTCCATCACATCAAGCTGATGACT TTAAGGACGCTTGTCGAAACATTATAGAGGAACAGAAGTTATTGCTTGCGTCCGAGAATGTACAGAATGGCAATTTTCACGACGACAGAAATGCAGCGGT TCAGGATCTACAACTTGGGTATAGTTCTAAAAGGTTCAGATCACAACTCAAAGCGTATACTGCCCATGTTGCAGAAGAGACTTATATTTATAGGTCACTG CCACTTGGTCAAGATCGCAGGCGTAACCGTTACTGGCTGTTTGTTGCTTCTGCTTCTCGTAGTGATCCTTGCTCTGGTAGGATCTTTGTTGAATTACAAA ATGGAACATGGAGGGTTATTGATTCTGAAAAGGAGTTCGATGCCCTTTTGTCGTCCTTGGACAGTCGTGGGATTAGGGAATCCCATTTGGGTTTGATGTT GAAGAAGATTGAGATGTCCTTCAAAGATACTGTTAGGAAGAGCTTGCAATCTAGCAAATCAATGGAAGATGAAGTCTCACGAAGAGACTCCAGCCCTAAT TGTTCAGCTGGTACGGAAAGTCCTAGCAGTTTGGTTTGCGGAACGAATTCCGATCTACATGATGTATTTTCTTTGTTCCGAATCGAGATTGGGAGGAACG AACGGGAGAAACGGGGGGCGTTAAGGAGGTATCAGGATTTGCAGATGTGGATTTGGAAAGAAAGCCTCAGCCCAACGGCATCATGTGCCATGAAGTTCGG AAAGAAACGATCCAGACAACTGTTGGATGCATGTGACTCGTGTCTTGATTCGTACGCATTCGAAGATTGCCATTGTCGTTTTTGCCACCAGACTTTTGGT GGCAGCGATTTCAATTTTGCAGAACACGAAGATTTATGCAGTAAACGAAGTAACCCATACTCGATGGATGCCCGTGGGTCTAATTCATGTCTACCACTGG GGATCAATCTGCTTAAGGCTCTGTTAGCTTCAATGGAGGCATTTGTTCCAGCGGAAGCTCTCGAATCATTTTGGACCGAGAGCCATAGGAAGTCGTGGAG CAGGAGATTGGCGGCATTGTCATCAATTGAAGAACTTCTTCAGATGCTGACTGTGTTTGAGAGTGCCATAAAACCAGACTTCTTGTCACCTAATTACGAA TCTACGAAGGAATTACTTGGGATAACTGCACTAAATGAAAAATCTGATTTGGCCTCGGTTCGCGTACTTCCATGGATACCAAGAACCATGTCAGCTGTGG CTCTGAGACTCTTTGAGCTGGACGCTTCCATCATCTATGTAAAGCAAGAAAAGGATATGCCTTCTGATGACAAGCTCGATACACTTGTAATGAAGCAGCA TCGAGCTTACTCGCTTATCGAGCAAGAAAACTACAAGGAAGAGGTCGCGGTCAACCCACGGAGTAAGTCGAACGTAGGTAAACGTCGAAGAGTGAACAGC GATCTAGGACGAGTGTCGAAGAAGCAGCGGAGACGAACACCGACTCATAGACCGCCTTCCCAGACAAGCAATCGAAAGTCACAGGCGGCGAACAACCAAA GGCAAGGGATAGTAGCAGCGTCGAGGCTAGAGGTGAACATTCAAGAGCCGAGTCGGGGTCCAAGGACGGTCCGGAAGAGGAGACCGGAGAGTGTGAATGC CGGAGGAGAGCAACTTATTGGCCACGCGACCGAGAGGATGCCTCCTCCCAAAGGACGTTTCAATGAAGAAAGTTACGAGACTCGGAGGATGCAAGTCGAC GAGAGCGAGGATAGCAGTAGCAGTAGTGATAGCGGCAGCTCCTCGGATGAGGATGCTGCTGCACCGGTAGAAGAGTCGGGCGAGTCGGATGAGGATGCTG CTGCACTGATAGAAGAGTCTGACGATGATGCTGCCGAAGAAGAGGGGTACGAACAAGCGGCAGGTTGGAACCGGGGATTAGATGCAGCCGGAAAGTCCAA CTCGAATGGTTGGAGAGAGAACTCGGTGGAGGGGAGCGACGAGGAGGACCAAGAAGGAGCCTCCAGCGATGCTGCTGCTTCCGGGGACGAAAACAGGAAT GGAGTCGAAGATGAAGAGATGGTGGAAGAGGAGGATTCCGGTAATGAAGAAATGTCTGATGCTTCCGGTGAGGAAGGAAAGGATGATGATAAAGTGGCGA GGAACAAAAACGATGTGAGAGATAGTGACGACTCAGGAGAGGATGATAAAGTGGCGAGGAACGACGATGCAGGAGATAGTGACGATTCGGGAGAGTCGGA TGAGTACAGCAGCCACAAGTAG
AA sequence Show only first row Show all	>Lus10025454 pacid=23150795 polypeptide=Lus10025454 locus=Lus10025454.g ID=Lus10025454.BGIv1.0 annot-version=v1.0 MDSNSDGEDYQNRKPNKGVASGSGGGGDGKPKRQMKTPFQLETLEKAYSVETYPTEATRIELAKKLGLTDRQLQMWFCHRRLKDRREEKKEEKKVEKKEE KIPAKKPSRKALPMPESPLEDVKAEVPDPASDYGSGSGSGSSPYTDPRRMPVDDVPMSRGYKEPPQQSAILVRAIACVEAQLGEPLREDGPILGIEFDAL PPDAFGAPIAAVVEQQKRYSYDEKIVQRREGKSKKASGRALHEYQFLQDQSSRRPDTYGQVTQHSFHDTPADTSRRRTSTSVRGDERLPRVHGIQTPASR VRLLSAHEGKSHLLPSPQRDDNYLLRAQPYPQSVFHDANVFHGEADFMTQKKPKIKNEEARLREEAQESRTRKEIEKQDLLRRRNEERMRKEMERQDRER KKEEERLIRERQRDEEKSLREQKRELERRERMLQKEYIRAEKQKQKDEQRKEREEVRRKAAIEKATARRIAKESLDLIEDEQLELMELAAANKGLSSIVQ LDYNTLQTLDAFRDSLCTFPSESILLKKPFSFRPWVDSEDNVGNLLMIWRFCITFADVLGLWSFTLDEFIQALHDYDSRLLGEIHISLLKLIIKDIEDGG RAPTGLGTNQYSVANPEGGHPQIVEGAYMWGFDICKWQQLLNPLSWPEILRELALSAGFGPQLRDKNAAWRHSNDEANRYQETVSNLRNGLAAEKAFALM REKGLLNPRKSRHRLTPGTVKFAAFHVLSLEGSEGLTLIELADKIQKSGLRDLSTSRTPEASISVALTRDQKLFERVAPSTYCVRDPYRKDPADGEAILA EARKKMHVFANGFLEEEDADEVADDVERDDDSEAEADDDPEVDDLSTPLHADKIVGQANGVHTPFGNDNDDEKENGPTEIENDDPHIWSSLIVKSESEND LSRFPENGARETSTPGTIDQFADRNPLVGNAKEENVEIDESKFGESWVQGLAEGEYSHLSVEERLDALFKLVGIANEGSIIRSVLEDRLEAATALKKQMW AEAQSEKSHLRDDVIQILEVPSGNPSPSHQADDFKDACRNIIEEQKLLLASENVQNGNFHDDRNAAVQDLQLGYSSKRFRSQLKAYTAHVAEETYIYRSL PLGQDRRRNRYWLFVASASRSDPCSGRIFVELQNGTWRVIDSEKEFDALLSSLDSRGIRESHLGLMLKKIEMSFKDTVRKSLQSSKSMEDEVSRRDSSPN CSAGTESPSSLVCGTNSDLHDVFSLFRIEIGRNEREKRGALRRYQDLQMWIWKESLSPTASCAMKFGKKRSRQLLDACDSCLDSYAFEDCHCRFCHQTFG GSDFNFAEHEDLCSKRSNPYSMDARGSNSCLPLGINLLKALLASMEAFVPAEALESFWTESHRKSWSRRLAALSSIEELLQMLTVFESAIKPDFLSPNYE STKELLGITALNEKSDLASVRVLPWIPRTMSAVALRLFELDASIIYVKQEKDMPSDDKLDTLVMKQHRAYSLIEQENYKEEVAVNPRSKSNVGKRRRVNS DLGRVSKKQRRRTPTHRPPSQTSNRKSQAANNQRQGIVAASRLEVNIQEPSRGPRTVRKRRPESVNAGGEQLIGHATERMPPPKGRFNEESYETRRMQVD ESEDSSSSSDSGSSSDEDAAAPVEESGESDEDAAALIEESDDDAAEEEGYEQAAGWNRGLDAAGKSNSNGWRENSVEGSDEEDQEGASSDAAASGDENRN GVEDEEMVEEEDSGNEEMSDASGEEGKDDDKVARNKNDVRDSDDSGEDDKVARNDDAGDSDDSGESDEYSSHK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G28420	HD	HB-1	homeobox-1 (.1)		Lus10025454 [exp]	0	1
AT1G28420	HD	HB-1	homeobox-1 (.1)		Lus10015325 [exp]	1.0	0.8985
AT2G46560			transducin family protein / WD...		Lus10005974 [exp]	2.0	0.8961
AT3G02890			RING/FYVE/PHD zinc finger supe...		Lus10020350 [exp]	4.6	0.8812
AT3G14460			LRR and NB-ARC domains-contain...		Lus10005321 [exp]	10.4	0.8012
AT5G42940			RING/U-box superfamily protein...		Lus10010036 [exp]	11.6	0.8610
AT4G15840			BTB/POZ domain-containing prot...		Lus10002873 [exp]	15.0	0.8393
AT5G36930			Disease resistance protein (TI...		Lus10004257 [exp]	21.6	0.8416
					Lus10022149 [exp]	22.3	0.7623
					Lus10030178 [exp]	22.4	0.7878
AT2G22010		RKP	related to KPC1 (.1.2)		Lus10016817 [exp]	22.4	0.8482

Compare expression of checked genes

Lus10025454 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.