Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G46080 261 / 3e-85 Protein kinase superfamily protein (.1) AT3G59420 154 / 2e-41 ACR4 crinkly4 (.1) AT5G02800 144 / 7e-40 CDL1 CDG1-like 1, Protein kinase superfamily protein (.1) AT3G07070 144 / 2e-39 Protein kinase superfamily protein (.1) AT5G13160 144 / 4e-39 PBS1 avrPphB susceptible 1, Protein kinase superfamily protein (.1) AT1G55610 147 / 6e-39 BRL1 BRI1 like (.1.2) AT4G39400 147 / 8e-39 DWF2, CBB2, BIN1, BRI1, ATBRI1 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) AT3G24790 141 / 8e-39 Protein kinase superfamily protein (.1) AT3G13380 146 / 1e-38 BRL3 BRI1-like 3 (.1) AT5G62710 144 / 2e-38 Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015326 [exp] 548 / 0 AT5G46080 271 / 4e-89 Protein kinase superfamily protein (.1) Lus10003926 [exp] 152 / 8e-41 AT1G53730 885 / 0.0 STRUBBELIG-receptor family 6 (.1.2) Lus10019897 [exp] 147 / 1e-40 AT5G02800 533 / 0.0 CDG1-like 1, Protein kinase superfamily protein (.1) Lus10015756 [exp] 148 / 2e-40 AT5G13160 732 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1) Lus10012814 [exp] 147 / 5e-40 AT5G18610 807 / 0.0 Protein kinase superfamily protein (.1.2) Lus10033966 [exp] 147 / 6e-40 AT5G18610 805 / 0.0 Protein kinase superfamily protein (.1.2) Lus10014019 [exp] 145 / 1e-39 AT5G02800 532 / 0.0 CDG1-like 1, Protein kinase superfamily protein (.1) Lus10033533 [exp] 149 / 2e-39 AT4G39400 1492 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10034082 [exp] 147 / 4e-39 AT5G38560 700 / 0.0 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G058300 [exp] 286 / 3e-95 AT5G46080 327 / 4e-111 Protein kinase superfamily protein (.1) Potri.004G049200 [exp] 283 / 4e-94 AT5G46080 321 / 4e-109 Protein kinase superfamily protein (.1) Potri.001G060800 [exp] 148 / 2e-40 AT5G13160 714 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1) Potri.003G166900 [exp] 148 / 2e-40 AT5G13160 745 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1) Potri.011G137000 [exp] 146 / 2e-40 AT3G20530 555 / 0.0 Protein kinase superfamily protein (.1) Potri.008G205700 [exp] 148 / 3e-40 AT5G18610 783 / 0.0 Protein kinase superfamily protein (.1.2) Potri.004G024500 [exp] 149 / 6e-40 AT4G23180 675 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.011G000500 [exp] 145 / 6e-40 AT3G20530 481 / 2e-170 Protein kinase superfamily protein (.1) Potri.004G024632 [exp] 144 / 6e-40 AT4G23180 527 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.001G421400 [exp] 142 / 4e-39 AT3G20530 587 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10025455 pacid=23150877 polypeptide=Lus10025455 locus=Lus10025455.g ID=Lus10025455.BGIv1.0 annot-version=v1.0 ATGAACAACAACACAGTGGAGCAAATCTCCTACGACTTCGTCCTCGCCCTTCTATCCATAATCCTAATCCTCCTCATCATCTCCCTCTTCATCTCATGCC GAACCCACTCAACCCAACCTGAAACCCGTATCGAAACCCGACTCCAAAACCATCCTCCTCCTCCTCCTTCCGCCAGAGTATACAATTTCACCGAAATCAA CACGGCCACCGACGGGTTCAACCCACAACGGATAATCGGGAGGGGAAACACAAGCACGGTATACGCCGCCGTTTTATCCCAAAACGACGAGGACGTCACG GTGGCAGTCAAAAGAATACACCCGCCACTCGTTCTACGAAATGCCTCGCTGGGATTTTCAACAACAATCAAGAGTACTCTGTTTTCCTCTTCCTCTGCCC ACCGAAACGTCGTCGGGCTGTTGGGTTACTGCCAGGCTCCAGGGGAGAGGATTCTGGTGATGGAATTCGTGGGGATGGTGAATTTGTATTACTTGCTGCA TGATTCTGATCAAGAAGGAGGGGAATTGTTGCTGGATTGGAATCGAAGGTTGAAGATCGCGGCAGGGGTTGCGAGGGGAATCGAGTACTTGCACGAGAAG ATGGGTTCTTCAGGGATCGTCCATGGCTGTGTGAAGTCGTCCAAGGTTTTTCTCGACGGCGAATTGAACCCAAAGATTTGCGATTATGGCATGTGGTTCC TGATGGCGAACAATCAAGCCGGTGGTGGTGGGTACGTCGACGAAGAGTATTGGAAGTCAGGGCCGTCGAAGGAGAGCGATGTTTACGGGTTCGGAGTGGT GCTACTAGAGCTTCTGACGGGGAGGAGAGCAGCGGGGACCCCAGAACTGGCGAAATGGGTGGTCCCGTTGATGAAAGAGTCGATGTTCAGCGAAATTTTG GATCCGAGACTCGTCGTGAGGACTAGTGATGTGAATGTGGTTGTCAGGTTGTGTAAAGTTGCTTCGGCTTGTGTTAGTAACTGTAGGATGAGTCGTCCGC CGATCGTTCAGGTGGCCGCCATTCTCAACTGTCTTGAGAGGGATTCTTCTTCTTAG
AA sequence Show only first row Show all	>Lus10025455 pacid=23150877 polypeptide=Lus10025455 locus=Lus10025455.g ID=Lus10025455.BGIv1.0 annot-version=v1.0 MNNNTVEQISYDFVLALLSIILILLIISLFISCRTHSTQPETRIETRLQNHPPPPPSARVYNFTEINTATDGFNPQRIIGRGNTSTVYAAVLSQNDEDVT VAVKRIHPPLVLRNASLGFSTTIKSTLFSSSSAHRNVVGLLGYCQAPGERILVMEFVGMVNLYYLLHDSDQEGGELLLDWNRRLKIAAGVARGIEYLHEK MGSSGIVHGCVKSSKVFLDGELNPKICDYGMWFLMANNQAGGGGYVDEEYWKSGPSKESDVYGFGVVLLELLTGRRAAGTPELAKWVVPLMKESMFSEIL DPRLVVRTSDVNVVVRLCKVASACVSNCRMSRPPIVQVAAILNCLERDSSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G46080			Protein kinase superfamily pro...		Lus10025455 [exp]	0	1
					Lus10021100 [exp]	2.2	0.9065
AT4G21540		SPHK1	sphingosine kinase 1 (.1.2.3)		Lus10011246 [exp]	2.4	0.9044
AT4G11410			NAD(P)-binding Rossmann-fold s...		Lus10024647 [exp]	11.8	0.8652
AT5G67400		RHS19	root hair specific 19 (.1)		Lus10032035 [exp]	14.8	0.8978
AT3G52880		ATMDAR1	monodehydroascorbate reductase...		Lus10008633 [exp]	16.9	0.8653
AT2G29050		ATRBL1	RHOMBOID-like 1 (.1.2)		Lus10023789 [exp]	18.2	0.8693
AT3G11180			2-oxoglutarate (2OG) and Fe(II...		Lus10004387 [exp]	18.7	0.8731
AT2G22250		ATAAT, AAT, MEE...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10023080 [exp]	21.3	0.8297
AT2G36780			UDP-Glycosyltransferase superf...		Lus10007597 [exp]	24.5	0.8331
AT4G16820		PLA-I{beta]2	phospholipase A I beta 2, alph...		Lus10000600 [exp]	26.1	0.8779

Compare expression of checked genes

Lus10025455 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.