Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G46070 1327 / 0 Guanylate-binding family protein (.1) AT1G03830 441 / 1e-137 guanylate-binding family protein (.1.2) AT2G38840 130 / 5e-31 Guanylate-binding family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015327 [exp] 1965 / 0 AT5G46070 1415 / 0.0 Guanylate-binding family protein (.1) Lus10013965 [exp] 1652 / 0 AT5G46070 1390 / 0.0 Guanylate-binding family protein (.1) Lus10015390 [exp] 1640 / 0 AT5G46070 1392 / 0.0 Guanylate-binding family protein (.1) Lus10018638 [exp] 541 / 3e-175 AT5G46070 526 / 2e-169 Guanylate-binding family protein (.1) Lus10018755 [exp] 137 / 4e-33 AT2G38840 989 / 0.0 Guanylate-binding family protein (.1) Lus10024841 [exp] 136 / 5e-33 AT2G38840 976 / 0.0 Guanylate-binding family protein (.1) Lus10014720 [exp] 132 / 1e-31 AT2G38840 976 / 0.0 Guanylate-binding family protein (.1) Lus10003085 [exp] 101 / 5e-24 AT2G38840 298 / 8e-99 Guanylate-binding family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G049400 [exp] 1597 / 0 AT5G46070 1334 / 0.0 Guanylate-binding family protein (.1) Potri.011G058500 [exp] 1582 / 0 AT5G46070 1355 / 0.0 Guanylate-binding family protein (.1) Potri.017G016800 [exp] 1009 / 0 AT5G46070 928 / 0.0 Guanylate-binding family protein (.1) Potri.005G168402 [exp] 118 / 9e-32 AT5G46070 116 / 5e-32 Guanylate-binding family protein (.1) Potri.002G046000 [exp] 132 / 1e-31 AT2G38840 1011 / 0.0 Guanylate-binding family protein (.1) Potri.005G217300 [exp] 127 / 4e-30 AT2G38840 960 / 0.0 Guanylate-binding family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF02841 [flax] [poplar] GBP_C Guanylate-binding protein, C-terminal domain CL0023 [flax] [poplar] P-loop_NTPase PF02263 [flax] [poplar] GBP Guanylate-binding protein, N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10025456 pacid=23150817 polypeptide=Lus10025456 locus=Lus10025456.g ID=Lus10025456.BGIv1.0 annot-version=v1.0 ATGTTCAAGATCTTCAAAGGCCGGGAGAACACCGGCGAAGGATCTTCAGTATCTGCTTCTTCTTCTCTTTCGCCGTCTTCAATGTCGCAGTCACCGGTGA CGGGGCCTGCTAGGCCGATTCGCCTTGTCTACTGCGACGAGAAGGGCAAGTTCCGGATGGACCCCGAGGCCGTGGCTACCCTCCAGCTCGTCAAAGGTCC GATTGGAGTTGTTTCCGTCTGTGGCCGCGCTCGCCAGGGGAAAAGCTTCATCCTAAATCAGCTCCTTGGGCGGAGTAGTGGATTTCAAGTAGCGTCAACC CATAAGCCATGTACAAAAGGGCTCTGGTTGTGGAGTGCCCCCATAAAGAGAACTGCTCTTGATGGTACTGAGTATAATCTTTTACTCCTAGACAGTGAAG GCATTGATGCTTATGATCAAACAGGAACATACAGTACTCAGATATTCTCTTTGGCTGTGCTCTTATCTAGCATGTTTATCTATAATCAGATGGGGGGCAT AGATGAAGCTGCACTGGATCGCCTCTCTCTTGTCACTCAAATGACGGAACATATCCGTGTGAGAGCTTCTGGTGGAAAGACAACTGCTTCTGAGATTGGA CAATTTTCCCCAATTTTTGTTTGGCTACTAAGGGATTTCTATCTTGATTTAACTGAAGATAATAGAAAAATTACTCCACGTGATTATTTGGAGCTTGCTT TAAGATCTGTTCAAGGCAGTGTAAGAGATATTGGTGCTAAAAATGAGATCCGAGATGCCATTAGAGCACTGTTTCCGCATAGAGAATGCTTCCCACTTGT AAGGCCTTTGAACAACGAAAATGATCTCCAGCGAATGGACCAAATCCCGCTGGAAAGGTTAAGGCCTGAATTTAGATCTGGTCTAGATGCTTTAACAAGG TTCGTGTTTGAGAAAACAAGGCCAAAGCAAGTTGGGGCCACTGTAATGACAGGACCCATCCTTGTTGGAGTCACAGAATCTTATTTGGAGGCTCTGAACA ATGGTGCAGTTCCTACAATCGCTTCTTCGTGGCAGAGTGTTGAAGAAGCCGAGTGCCGGAGAGCATATGATGCTGCTACTGAAACTTATATGTCTACCTT TGACCGTTCTACACCACCTGAGGAAGGGTCTTTGAGGGAAGCTCACGAAGCAGCAGTCCAGAAGTCTATGGCTGTGTTCAACAATGGCGCAGTGGGGATT GGCAACGTTCAAAAGAAATTTGAAGAGCTTGTTCAGAAATTCTTCAGAAAGGCTTTTGAGGATTATAAGAGGAATGCATTTATGGAGGCTGACTTGCGCT GTTCAAGTGGCATTCAAAGCATGGAAAAGAGGCTCAGAGCAGCTTGCCATTCTTCTGATGCAAATCTAGATAAAGTTGTGAAGGTTCTGGATGTTCTTAT CTCTGAATACGAGGCATCGTCTCATGGCCCTGGAAAATGGAAGAAATTAGCCGAGTTCCTTCAACAAAGTTTCGAAGGGCCGATACATGACCTTGCAAAA AGGCTCGTTGATCAAGTAGGCTCGGAGAGGACTTCCCTCATGTTGAAGTGTCGTTCGATCGAGGATAAGATGGCATTACTTAACAGGCAGCTCGAAGCTA GCGAGGGCCATAAATCTGAGTATATGAGGCGTTATAACGAAGCTATCAATGAAAAGAAGCAGCTTGCCGATGATTATATGAAGCGCATATCTGACATGCA GACCGGTCACAGCTCACTAGAAGAAAGGTATTCTAGCTTGCGGAAATCGTTGGAATCCGCCAAGGAAGAAACATCAGAATGGAAAAGGAAACACGATCAG GCTATGTCGAAGAAAAAGGCTGTGGAAGGTCAGGTTAATTCAGAAATTGCAGTTCTCAAGTCCAGAAGTAGTGCTGCAGAAGCGAGAATGGCTGCTGCTC ATGAACAGATGAGATCGGCTCAAGAAGAGGCTGTAGAGTGGAAACGGAAATATGACATTACAGTACGAGAGACAAAAGCTGCTCTTGAGAAAGCTGCTGT GTCTCAAGAACGTTCGAGTAAAGAAACTCAGCTGAGAGAAGATGCTTTAAGGGAAGAATTCTCAGGCCTTTTGGCTGACAAGGAGGAGGAAATAAAGGAA AGAAGTTCAAGGATAGAGTTCGCCGAGCAGCGTATAACAACATTGAACTTGGAATTGAAGGCTGCGGAGTCGAGGATCGAAAGTTATGATGCAGAGGTAT CAACCCTTAAACTCGAAATCAGGACATTGGTGGAGAGACTAGACGCTGCAGTCGCAAATGCGCAATCTTACGAGAAAGAAGCTAGGATGCTGGAACAAGA GAAGATCCACATAGAGCAAAGGTACCAATCCGAGTTCGAGAAGTTTGCAGAAGTCCAGCAAAGGTGCACTCTTGCCGAGAAGGAATCCAAGAGGGCAGTT GAAACGGCCGATAAAGCACGTACCGATGCAGTAACCGCACAAAAGGAGAAGAGCGAGTTCCAGAAACTAGCGATGGAGAGGCTGGCCCAAATCGAGAGGG CTCACAGGCAAATCGAGAATCTCGAGAGGGAGAGAGGAGATTTGGCGAACGAACTCGACAGGATTCGCTCCTCGGAAATCGACGCCTTATCGAGGGTCGC GCAGCTAGAAGGCAGAGTCGACGAGAGGGAGAGAGAGATCGAAAAGTTGTTGAAGTCGAACAATGAGGAAAGGGCGAGCAATGTTAAAGCGCTTCAAGGT TTACTCGAAGATGAACGGAAAGCTCACAGCGTGGCGAACAAGAGAGCCGAAGAACTCTCGTTTCAGCTAGAGGAGGCACGGGCGAAACTCGACACGCTCC AGCAGGAGTTCACTTCGGTTCGGCTGAACGAGTCTGCATTAGACGGTAAGCTGAAAGCTGTCTCCCACGGAAAGCGTCAGAGAAACGAGGATGTGGAAAT GGGCGGAGTTGGGTCCGTGCAGAACGAGAGACGAGAGAATAAGAGGGCCAGAAGCACGACAAGTCCGATGAAGTTTACGGCAGGAGGAGAAGACGGCGGT TCTGTGTTTAGAGAGGAGGAAGACGATACACAAAGCCAGCAGTCTGATCAAGAGGACTATACCAAGTTTACGATTCAGAAACTGAAGCAGGAACTGACGA AGCATAGTTTCGGCGGGCAGCTGCTTTCATTGAAGAACCCTAACAAGAAAGACATCCTTGCTTTGTATGAGAGGTGCGTTCTGCAGAAGTTGTGA
AA sequence Show only first row Show all	>Lus10025456 pacid=23150817 polypeptide=Lus10025456 locus=Lus10025456.g ID=Lus10025456.BGIv1.0 annot-version=v1.0 MFKIFKGRENTGEGSSVSASSSLSPSSMSQSPVTGPARPIRLVYCDEKGKFRMDPEAVATLQLVKGPIGVVSVCGRARQGKSFILNQLLGRSSGFQVAST HKPCTKGLWLWSAPIKRTALDGTEYNLLLLDSEGIDAYDQTGTYSTQIFSLAVLLSSMFIYNQMGGIDEAALDRLSLVTQMTEHIRVRASGGKTTASEIG QFSPIFVWLLRDFYLDLTEDNRKITPRDYLELALRSVQGSVRDIGAKNEIRDAIRALFPHRECFPLVRPLNNENDLQRMDQIPLERLRPEFRSGLDALTR FVFEKTRPKQVGATVMTGPILVGVTESYLEALNNGAVPTIASSWQSVEEAECRRAYDAATETYMSTFDRSTPPEEGSLREAHEAAVQKSMAVFNNGAVGI GNVQKKFEELVQKFFRKAFEDYKRNAFMEADLRCSSGIQSMEKRLRAACHSSDANLDKVVKVLDVLISEYEASSHGPGKWKKLAEFLQQSFEGPIHDLAK RLVDQVGSERTSLMLKCRSIEDKMALLNRQLEASEGHKSEYMRRYNEAINEKKQLADDYMKRISDMQTGHSSLEERYSSLRKSLESAKEETSEWKRKHDQ AMSKKKAVEGQVNSEIAVLKSRSSAAEARMAAAHEQMRSAQEEAVEWKRKYDITVRETKAALEKAAVSQERSSKETQLREDALREEFSGLLADKEEEIKE RSSRIEFAEQRITTLNLELKAAESRIESYDAEVSTLKLEIRTLVERLDAAVANAQSYEKEARMLEQEKIHIEQRYQSEFEKFAEVQQRCTLAEKESKRAV ETADKARTDAVTAQKEKSEFQKLAMERLAQIERAHRQIENLERERGDLANELDRIRSSEIDALSRVAQLEGRVDEREREIEKLLKSNNEERASNVKALQG LLEDERKAHSVANKRAEELSFQLEEARAKLDTLQQEFTSVRLNESALDGKLKAVSHGKRQRNEDVEMGGVGSVQNERRENKRARSTTSPMKFTAGGEDGG SVFREEEDDTQSQQSDQEDYTKFTIQKLKQELTKHSFGGQLLSLKNPNKKDILALYERCVLQKL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G46070			Guanylate-binding family prote...		Lus10025456 [exp]	0	1
AT5G46070			Guanylate-binding family prote...		Lus10015327 [exp]	2.0	0.9322
AT3G52525	OFP	ATOFP6, OFP6	ARABIDOPSIS THALIANA OVATE FAM...		Lus10021302 [exp]	2.0	0.9195
AT4G29000	CPP		Tesmin/TSO1-like CXC domain-co...		Lus10023656 [exp]	3.2	0.9002
AT1G13110		CYP71B7	"cytochrome P450, family 71 su...		Lus10028113 [exp]	3.5	0.9388
AT5G48385			FRIGIDA-like protein (.1)		Lus10008744 [exp]	5.3	0.8959
AT5G42480		ARC6	ACCUMULATION AND REPLICATION O...		Lus10024309 [exp]	5.7	0.8774
AT2G30470	B3	HSI2, VAL1	VP1/ABI3-LIKE 1, high-level ex...		Lus10011245 [exp]	6.9	0.9104
AT1G44835			YbaK/aminoacyl-tRNA synthetase...		Lus10028064 [exp]	7.3	0.8803
AT1G04210			Leucine-rich repeat protein ki...		Lus10041180 [exp]	9.2	0.9085
AT1G63640			P-loop nucleoside triphosphate...		Lus10002007 [exp]	9.5	0.9199

Compare expression of checked genes

Lus10025456 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.