Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015330 [exp] 305 / 2e-102 AT5G57180 136 / 1e-36 chloroplast import apparatus 2 (.1.2.3) Lus10015538 [exp] 92 / 1e-20 AT5G57180 130 / 8e-34 chloroplast import apparatus 2 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G142100 [exp] 62 / 2e-10 AT5G57180 160 / 5e-44 chloroplast import apparatus 2 (.1.2.3) Potri.006G075200 [exp] 45 / 6e-05 AT5G57180 267 / 5e-85 chloroplast import apparatus 2 (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10025459 pacid=23150902 polypeptide=Lus10025459 locus=Lus10025459.g ID=Lus10025459.BGIv1.0 annot-version=v1.0 ATGGCGTCGCCGTGTTTAAGCGGAGGAGGAGGCGGGAGAGCGGCGTACGGATTCGACCTGGAAATCGCGGTGAAATCAGCTTCCTATTCTGCTTCGACTT CATCTCCTTCTTCGACTCTATCAGAATCGAGCAATTCGCCGATAGCAATCTCTACAAGGAGGAGGAAGCCTCGTACACCTCGGAAGCGGCCGAATCAGAC GTACAACGAAGCCGCGGCGATCCTCTCCACCGCCTACCCCAAACTCTTCTCCGCCAAACCTCTCCCTTCCTCCGCCGCCGCCGCTGCCATCCATTCCTTC CCCTTCGATTCCGCCGACTTGCTCCTCCCCTCCACCGCCGCCGATTCCAGATTCCTCCCCGCTTGGGAGAAAGTTAAACTAGCTAAATCGTCATCCGCCA CCACATCGGAGGTCAGCTCCCGTGACAATTCGAATTCTAAGGAATTCTCCGGCGTCGGCGGCGGAGGGTACGAGTTGGAAAGCGATGATTTTGATGCGGA GTCGATTCTGGATGAAGAAATCGAGGAAGGAGGGATCGACAGTATCATGGGGAATCTGAGTGTGGTAAACAGCTCGAGCAGCAACAGTGAAGAATCAGTC AACGTAGGTCAAACGACGGCGACAACGAGCAGCTTTGTGTACGGGTATCCGCCGGGATTTAACGGCAGGAATCTCCACCACTGGATTGGTAACGGAAACG GTGACGGAAACGGAGTAAGAGCGTTCAGGAGAGTAGACGACTGGTGGAGTTACCCTGTAGTCGACGTCTTCCAAATCTCTCCCCAATTGGATTCCAACTA CCGCCCGATTACCGCCACCTCCGATGGAGTTAAAACCAATTCAACGGAGAAGAAGAAGAGCAGCAAGACTAAGACGAAGAAGAAGAAGCTCGAAGATTTG GCGCCGGAGGATAAAGTAGATTTAAAAGGGAAAGGAGGTAAATTGCTCCTGAAATTGAACTACGATGACATTTTGAAAGCTTGGTCAGGGAAAGACTCTC CATTGCCGGTGGATTCAGTCTCCGCCGCCGGGAAACAATAA
AA sequence Show only first row Show all	>Lus10025459 pacid=23150902 polypeptide=Lus10025459 locus=Lus10025459.g ID=Lus10025459.BGIv1.0 annot-version=v1.0 MASPCLSGGGGGRAAYGFDLEIAVKSASYSASTSSPSSTLSESSNSPIAISTRRRKPRTPRKRPNQTYNEAAAILSTAYPKLFSAKPLPSSAAAAAIHSF PFDSADLLLPSTAADSRFLPAWEKVKLAKSSSATTSEVSSRDNSNSKEFSGVGGGGYELESDDFDAESILDEEIEEGGIDSIMGNLSVVNSSSSNSEESV NVGQTTATTSSFVYGYPPGFNGRNLHHWIGNGNGDGNGVRAFRRVDDWWSYPVVDVFQISPQLDSNYRPITATSDGVKTNSTEKKKSSKTKTKKKKLEDL APEDKVDLKGKGGKLLLKLNYDDILKAWSGKDSPLPVDSVSAAGKQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G57180		CIA2	chloroplast import apparatus 2...		Lus10025459 [exp]	0	1
AT5G57180		CIA2	chloroplast import apparatus 2...		Lus10015330 [exp]	1.0	0.9839
AT3G57430		OTP84	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10001220 [exp]	4.7	0.9462
AT1G11290		CRR22	CHLORORESPIRATORY REDUCTION22,...		Lus10042924 [exp]	4.9	0.9432
AT3G04260		PDE324, PTAC3	PIGMENT DEFECTIVE 324, plastid...		Lus10003578 [exp]	7.1	0.9434
AT4G26370			antitermination NusB domain-co...		Lus10010325 [exp]	7.7	0.9367
AT4G31850		PGR3	proton gradient regulation 3 (...		Lus10026884 [exp]	8.1	0.9363
AT1G19720			Pentatricopeptide repeat (PPR-...		Lus10001230 [exp]	8.5	0.9344
AT4G26150	GATA	GATA22, CGA1, G...	GNC-LIKE, GATA TRANSCRIPTION F...		Lus10006000 [exp]	9.8	0.9037
AT4G18130		PHYE	phytochrome E (.1)		Lus10004593 [exp]	11.5	0.9266
AT5G15700			DNA/RNA polymerases superfamil...		Lus10035150 [exp]	14.0	0.9356

Compare expression of checked genes

Lus10025459 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.