Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10025460 pacid=23150784 polypeptide=Lus10025460 locus=Lus10025460.g ID=Lus10025460.BGIv1.0 annot-version=v1.0 ATGGACTGCAAGAAGTTCATCCAGCTGGTGCAGGAGAAGAAGAAGAAAGCTTTGGAGAAGGAGGAAGCTCGTCTCCAGTGGGAGCAGAAGTTAGAAGCTG CTGCAAAGGCCAAGGCAAAGGCTGATGCCGAAGGCAGAGAAAAGAAGCTCAAGGTTTCCAAGCATAAAACAGCGAAGCACAAGAAACCGAACAGAAAGCA CCGGAGAAGGTCTTCTGATTCGAGCGATGATGACAGTGAAGAGTATGAGAGTGAGTTTGAGGATGTGAGGAAGAGGAAGAAGAGAAGCCACATGAAGCGT AGATCTCATGGAAGGAAATCCAGTTCTACTGATGCCGATTCATACAGTGATGATGATCACTTGAAGAAGCATCGTCACAAGCATCATAGAAGGTCAGTGT CTAGTGATACAGATTCCTCAACCGACGAGGAAAGGAAGATGCATGTTAAACGTCGTAAACGGTCCCATAGTGTGGACTCTATCGATTCTGATGGCCATAG GCATCGTCGGAGTAGGTCTCGATCCTCTGGCAATTCATCAGATGAGGGCAGAAGGAAGCACTCAAGGGATGCAAAATCTGGTCGAAGCTCTTGA
AA sequence Show only first row Show all	>Lus10025460 pacid=23150784 polypeptide=Lus10025460 locus=Lus10025460.g ID=Lus10025460.BGIv1.0 annot-version=v1.0 MDCKKFIQLVQEKKKKALEKEEARLQWEQKLEAAAKAKAKADAEGREKKLKVSKHKTAKHKKPNRKHRRRSSDSSDDDSEEYESEFEDVRKRKKRSHMKR RSHGRKSSSTDADSYSDDDHLKKHRHKHHRRSVSSDTDSSTDEERKMHVKRRKRSHSVDSIDSDGHRHRRSRSRSSGNSSDEGRRKHSRDAKSGRSS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G01100			unknown protein		Lus10025460 [exp]	0	1
AT2G01100			unknown protein		Lus10015331 [exp]	1.4	0.9414
					Lus10011267 [exp]	3.7	0.9334
AT5G03030			Chaperone DnaJ-domain superfam...		Lus10023494 [exp]	4.9	0.9240
AT1G36310			S-adenosyl-L-methionine-depend...		Lus10040430 [exp]	6.3	0.9179
AT1G36310			S-adenosyl-L-methionine-depend...		Lus10023545 [exp]	15.2	0.8933
AT2G25950			Protein of unknown function (D...		Lus10007454 [exp]	19.3	0.9128
					Lus10006539 [exp]	20.2	0.9101
AT1G56700			Peptidase C15, pyroglutamyl pe...		Lus10001521 [exp]	22.4	0.9113
AT1G11905			B-cell receptor-associated pro...		Lus10000048 [exp]	22.6	0.9175
AT2G29410		ATMTPB1, MTPB1	metal tolerance protein B1 (.1...		Lus10016487 [exp]	29.5	0.9014

Compare expression of checked genes

Lus10025460 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.