Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G30160 887 / 0 ATVLN4, VLN4 villin 4 (.1.2) AT5G57320 703 / 0 VLN5 villin 5, villin, putative (.1) AT2G29890 406 / 4e-128 ATVLN1, VLN1 villin 1, villin-like 1 (.1.2.3) AT2G41740 387 / 3e-120 ATVLN2, VLN2 villin 2 (.1) AT3G57410 370 / 4e-114 ATVLN3, VLN3 villin 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015333 [exp] 1314 / 0 AT4G30160 1395 / 0.0 villin 4 (.1.2) Lus10031066 [exp] 513 / 2e-168 AT2G41740 1320 / 0.0 villin 2 (.1) Lus10005861 [exp] 449 / 1e-144 AT2G29890 1049 / 0.0 villin 1, villin-like 1 (.1.2.3) Lus10035450 [exp] 378 / 5e-117 AT2G41740 1402 / 0.0 villin 2 (.1) Lus10015334 [exp] 198 / 8e-60 AT4G30160 132 / 3e-37 villin 4 (.1.2) Lus10015332 [exp] 77 / 9e-17 AT4G30160 100 / 4e-26 villin 4 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G165300 [exp] 979 / 0 AT4G30160 1507 / 0.0 villin 4 (.1.2) Potri.018G089700 [exp] 976 / 0 AT4G30160 1464 / 0.0 villin 4 (.1.2) Potri.006G050200 [exp] 532 / 1e-175 AT2G41740 1340 / 0.0 villin 2 (.1) Potri.016G056200 [exp] 387 / 1e-121 AT2G41740 1248 / 0.0 villin 2 (.1) Potri.009G045000 [exp] 320 / 2e-95 AT2G29890 1101 / 0.0 villin 1, villin-like 1 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0092 [flax] [poplar] ADF PF00626 [flax] [poplar] Gelsolin Gelsolin repeat CL0092 [flax] [poplar] PF02209 [flax] [poplar] VHP Villin headpiece domain
Representative CDS sequence Show only first row Show all	>Lus10025461 pacid=23150841 polypeptide=Lus10025461 locus=Lus10025461.g ID=Lus10025461.BGIv1.0 annot-version=v1.0 ATGTATAGTGGTCTTGAGATATGGCGGATTGAGAACTTTAATCCCGTGGCTATTCCAAGTGCTTCATATGGCAAGTTCTTTACAGGGGACTCCTACATAG TTTTGAAGAGTATTGCTTCAAAAAGTGGTTCCATGCGCCATGATATTCATTATTGGCTTGGCAAAGATACCTCACAGGATGAAGCTGGTGTTGCTGCTAT AAAAACAGTAGAGCTTGATGCAGCTCTTGGAGGCCGTGCAGTGCAGTATCGTGAAGTGCAGGGCCATGAGACCGAGAAGTTCTTATCGTATTTTAAACCA TGCATCATACCACAAGAAGGTGGAGTTGCATCTGGATTCAAACATGTTGAGGCTGAAGAGCATCAAACAAGGTTGCTTGTTTGCAAAGGAAAGCGTGTTG TTCGTGTAAAGGAGGCAAAGGATGGAAGATTGATGGCTGATGCTGAAACTGGAGAGTTCTGGGGTTTCTTTGGTGGCTTTGCTCCACTTCCACGCAAAAC GGCCAGTGATGACGATAAATCACCTTCTTCCGAAGATACGAAGCTCTTTTGCATTGAAAAGGGTCAGGCTGAGCCGGTTGAAGCAGATACTTTTACTAGA GAGTTGTTGGACACAAATAAATGTTATGTTCTTGATTGTGGAGCTGAAGTATATGTATGGATGGGGAAAGCTACCAGTCTTGACGAAAGGAAGAATGCAA GCAAAGCAGCAGAAGAAATAATTCATGGTGCTGATAGACCAAAATCCCAAATAATCAGGGTAATGGAGGGTTTTGAGACTGTAACATTCCGGTCAAAGTT TGCATCATGGCCCCAAGCAGCTAATGTAGATGTAGCCGATGAAGGCAGAGGGAAAGTTGCAGCACTTCTGAAACGGCAGGGGCTTAATGTGAAGGGCCTA GTGAAAGCTGCCCCTGCAAAAGAAGAGGAGCCACCGCCCCCTATAGATGTTACAGGAACTATTCAGGGCATAGATGTTACAGGAAATTTGCAGGTTTGGC GGGTTAATGGAGAAGAAAAGGTTCTCCTTCCGGCTTCAGATCAGTTTAAGTTATACAGTGGAGAATGTTACGTTTTTCAATATGCATATCCAGGAGAAGA CACAGAGGAGTGTCTTATAGGAACATGGTTTGGGAAGCAGAGTGTGGAGGCTCGCATCTGTGAAGGAATGGAGACGCTACAATTCCTTTCAATCTTTCAG AGCTTTATTATCTTTAAGGGTGGTCTTAGTGCTGGATACAAGAAGTTCATCGAGGAGAATGAGCTAACCGATGAAACATACAGTGAGGATGGTATTGCAT TATTCCGAATTCAGGGGACGGGCCCAGAAAATATGCAAGCAATTCAAGTCGAACCAGTAGCATCGTCTTTGAACTCCTCCTACTGCTACATATTACATAA TGGCTCAGCAGTCTATACATGGACTGGAAACCTTACTACCACAGAGGATCAGGAAGTTGTTGAGAGGTTGCTAGATCTGATAAAGCCAAATATGCAATCC AAGCCCCAAAAGGACGGGTCAGAATCTGATCAATTTTGGGAACTTTTAGGAGGGAAAACTGAACATGCTAGTCAAAAAATTGCAAAGGAACCGGAGAGCG ATCCTCACCTATTCTCTTGCTCGTTCTCTAAAGAGGTATATGTCTGGGTGGGACAACAGGTTGACACCAAGACCAAAACAAAAGCTTTGACTATCGGCGA GCAATTCATTGAGAATGACTTCCTGCTGGAGAATTTATCCCGTCAAACGCCAATTTATATAGTCATGGAAGGGAGTGAGCCATCTTTTTTCACTCGATTC TTCATGTGGGATCCAGCGAAATCTGCAATGGTTGGAAATTCTTTCCAAAGGAGGCTTACTATTCTGAAAGGGGGAACTCCAATTATTGATGTAAGAACAT TTGCCCATCTTATCATATTGGTACCAAGGGGCAGATCTCCAGCCTTCAATGCTCTGGCTGCTACTTTTGAGAACCCCAATGCTAGGAACCTGTCCACTCC ACCGCCAGGGGTTCAGAAGATTTATCCAAAGTCCGGGAGTGGGAGTCCAGTAGCTTCAAAGCTGGCTTCTAAAGCTGCAGCCATAGCAGCACTTACTGCA ACTTTCGAACAACCATTGCCAGCACGACAAATGATAATGGCAAGAACAGTCAAACCAAATCCTCAAGGTCCAAAATCAACACCGGCGGAGTCAGACTCCA AAGGAGGGGACTCAATGAGCAGCAGGATGGAGTCTCTTTCAATAAAGGAAGATGCGAAAGAGAACGAACCCGAGGATGAAGAAGGGCTCCCGATTTTCCC ATACGACCGGGTCAAAGTTAACGCAGAAGATCCTGCTGATGAGATTGACGTGACCAAGCGCGAGACATATCTATCGTCGGCGGAGTTCAAGGAGAAATTC GGGATGGGGAAGGATGCATTCTATAAGTTGCCTAAATGGAAACAGAACAAGCTCAAAATGGCTATTCAATTATTCTGA
AA sequence Show only first row Show all	>Lus10025461 pacid=23150841 polypeptide=Lus10025461 locus=Lus10025461.g ID=Lus10025461.BGIv1.0 annot-version=v1.0 MYSGLEIWRIENFNPVAIPSASYGKFFTGDSYIVLKSIASKSGSMRHDIHYWLGKDTSQDEAGVAAIKTVELDAALGGRAVQYREVQGHETEKFLSYFKP CIIPQEGGVASGFKHVEAEEHQTRLLVCKGKRVVRVKEAKDGRLMADAETGEFWGFFGGFAPLPRKTASDDDKSPSSEDTKLFCIEKGQAEPVEADTFTR ELLDTNKCYVLDCGAEVYVWMGKATSLDERKNASKAAEEIIHGADRPKSQIIRVMEGFETVTFRSKFASWPQAANVDVADEGRGKVAALLKRQGLNVKGL VKAAPAKEEEPPPPIDVTGTIQGIDVTGNLQVWRVNGEEKVLLPASDQFKLYSGECYVFQYAYPGEDTEECLIGTWFGKQSVEARICEGMETLQFLSIFQ SFIIFKGGLSAGYKKFIEENELTDETYSEDGIALFRIQGTGPENMQAIQVEPVASSLNSSYCYILHNGSAVYTWTGNLTTTEDQEVVERLLDLIKPNMQS KPQKDGSESDQFWELLGGKTEHASQKIAKEPESDPHLFSCSFSKEVYVWVGQQVDTKTKTKALTIGEQFIENDFLLENLSRQTPIYIVMEGSEPSFFTRF FMWDPAKSAMVGNSFQRRLTILKGGTPIIDVRTFAHLIILVPRGRSPAFNALAATFENPNARNLSTPPPGVQKIYPKSGSGSPVASKLASKAAAIAALTA TFEQPLPARQMIMARTVKPNPQGPKSTPAESDSKGGDSMSSRMESLSIKEDAKENEPEDEEGLPIFPYDRVKVNAEDPADEIDVTKRETYLSSAEFKEKF GMGKDAFYKLPKWKQNKLKMAIQLF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G30160		ATVLN4, VLN4	villin 4 (.1.2)		Lus10025461 [exp]	0	1
AT4G30160		ATVLN4, VLN4	villin 4 (.1.2)		Lus10015333 [exp]	1.0	0.9692
AT1G30690			Sec14p-like phosphatidylinosit...		Lus10023378 [exp]	2.2	0.8954
AT1G60070			Adaptor protein complex AP-1, ...		Lus10030640 [exp]	5.1	0.8664
AT3G08530			Clathrin, heavy chain (.1)		Lus10028976 [exp]	5.1	0.9445
AT1G60070			Adaptor protein complex AP-1, ...		Lus10029177 [exp]	7.3	0.9256
AT1G71270		ATVPS52, TTD8, ...	T-DNA TRANSMISSION DEFECT 8, P...		Lus10016549 [exp]	9.6	0.8459
AT3G12110		ACT11	actin-11 (.1)		Lus10004169 [exp]	10.7	0.8728
AT3G08530			Clathrin, heavy chain (.1)		Lus10007499 [exp]	11.1	0.9255
AT3G44200		IBO1, ATNEK6	"NIMA \(never in mitosis, gene...		Lus10001857 [exp]	13.9	0.8170
AT1G47380			Protein phosphatase 2C family ...		Lus10042659 [exp]	14.4	0.8107

Compare expression of checked genes

Lus10025461 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.