Gene [FLAX] | FIBexDB

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Symbol

Arabidopsis homologues

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Locus ID	BLAST score/e-value	TAIR10 short description
AT4G25940	613 / 0	ENTH/ANTH/VHS superfamily protein (.1)
AT5G57200	542 / 0	ENTH/ANTH/VHS superfamily protein (.1)
AT1G14910	493 / 1e-167	ENTH/ANTH/VHS superfamily protein (.1)
AT2G01600	485 / 5e-166	ENTH/ANTH/VHS superfamily protein (.1)
AT5G35200	394 / 8e-131	ENTH/ANTH/VHS superfamily protein (.1)
AT4G32285	219 / 3e-63	ENTH/ANTH/VHS superfamily protein (.1.2)
AT1G03050	208 / 2e-59	ENTH/ANTH/VHS superfamily protein (.1)
AT4G02650	187 / 8e-52	ENTH/ANTH/VHS superfamily protein (.1)
AT1G05020	183 / 7e-50	ENTH/ANTH/VHS superfamily protein (.1)
AT2G25430	147 / 2e-37	epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related (.1)

Paralogs

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Gene ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Lus10015335 [exp]	553 / 0	AT4G25940	385 / 6e-126	ENTH/ANTH/VHS superfamily protein (.1)
Lus10013469 [exp]	519 / 9e-179	AT2G01600	758 / 0.0	ENTH/ANTH/VHS superfamily protein (.1)
Lus10021796 [exp]	513 / 1e-176	AT2G01600	756 / 0.0	ENTH/ANTH/VHS superfamily protein (.1)
Lus10034610 [exp]	504 / 3e-173	AT2G01600	765 / 0.0	ENTH/ANTH/VHS superfamily protein (.1)
Lus10007933 [exp]	510 / 3e-172	AT2G01600	758 / 0.0	ENTH/ANTH/VHS superfamily protein (.1)
Lus10038122 [exp]	405 / 5e-135	AT5G35200	714 / 0.0	ENTH/ANTH/VHS superfamily protein (.1)
Lus10005184 [exp]	399 / 1e-132	AT5G35200	702 / 0.0	ENTH/ANTH/VHS superfamily protein (.1)
Lus10003642 [exp]	311 / 6e-99	AT5G35200	380 / 2e-126	ENTH/ANTH/VHS superfamily protein (.1)
Lus10035340 [exp]	183 / 2e-49	AT1G05020	489 / 1e-164	ENTH/ANTH/VHS superfamily protein (.1)

Poplar homologues

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Locus ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Potri.018G142800 [exp]	656 / 0	AT5G57200	655 / 0.0	ENTH/ANTH/VHS superfamily protein (.1)
Potri.006G075800 [exp]	653 / 0	AT2G01600	543 / 0.0	ENTH/ANTH/VHS superfamily protein (.1)
Potri.008G132100 [exp]	528 / 0	AT2G01600	749 / 0.0	ENTH/ANTH/VHS superfamily protein (.1)
Potri.010G110000 [exp]	525 / 0	AT2G01600	732 / 0.0	ENTH/ANTH/VHS superfamily protein (.1)
Potri.006G065100 [exp]	398 / 2e-132	AT5G35200	621 / 0.0	ENTH/ANTH/VHS superfamily protein (.1)
Potri.018G125284 [exp]	393 / 2e-130	AT5G35200	646 / 0.0	ENTH/ANTH/VHS superfamily protein (.1)
Potri.T125107 [exp]	392 / 7e-130	AT5G35200	644 / 0.0	ENTH/ANTH/VHS superfamily protein (.1)
Potri.T124907 [exp]	247 / 3e-78	AT5G35200	357 / 4e-122	ENTH/ANTH/VHS superfamily protein (.1)
Potri.006G118100 [exp]	208 / 2e-59	AT1G03050	605 / 0.0	ENTH/ANTH/VHS superfamily protein (.1)
Potri.002G224500 [exp]	196 / 1e-54	AT1G05020	500 / 2e-170	ENTH/ANTH/VHS superfamily protein (.1)

PFAM info

Clan ID	Clan name	Pfam ID	Pfam name	Pfam description
CL0009 [flax] [poplar]	ENTH_VHS	PF07651 [flax] [poplar]	ANTH	ANTH domain

Representative CDS sequence

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>Lus10025462 pacid=23150901 polypeptide=Lus10025462 locus=Lus10025462.g ID=Lus10025462.BGIv1.0 annot-version=v1.0

ATGGGGACATTCACAAGCTTCAGAAAAGCTTATGGAGCTCTTAAAGACACCACCAAAGTTGGACTTGCAAAAGTTAATAGTGATTTCAAGGATTTAGATA

TTGCCATCGTGAAAGCCACCAATCATGTCGAATGCCCTCCTAAAGAACGCCATGTTCGAAGGATTTTTTCCGCGACATCGGTGATCCGTCCTCGTGCAGA

TGTTGCATATTGTATTCATGCTCTTGCCAAGAGATTATCCAAGACTAAAAATTGGGTTGTTGCAATCAAGGTGCTAATCGTGATCCATAGGACACTAAGA

GAAGGAGATCCGACTTTCCGCGAAGAGCTTCTGAATTTCGCACAACGAGGGAAGATACTCCAAATCTCGAATTTCAAAGATGATTCCGGCATGAACGCTT

GGGATTGCTCGGCGTGGTGTCGAGCATATGCACAATTCTTGGAGGAAAGACTGGAGTGCTTCAGGGTTTTGAAGTACGACATTGAAGCTGAACGCCTCTC

TAAATTGTCTCCGAGTTTGTCCAAGGTGAATACTAGGACTCGGATTCTGAATCGGACCGAGTTGTTGGATCAATTACCGGCTCTGCAGCAACTTCTATAC

CGCCTCATCGGTTGCCAACCAGAAGGAACAGCCTACAGTAATTACCTGGTTCAGTATGCTTTGGCTTTGATCTTGAAAGAAAGTTTCAAAATTTACTGTG

CAATCAATGATGGCATCATTAACCTTGTCGATATGTTCTTTGATATGTCAAGACATGATGCCATCAAAGCACTAACAATATACAAGAGAGCAGGCCAACA

GGCGGAAAACCTTGCTGAATTTTATGAGCAATGCAAAGGGTTGGATCTTGCCAGGACCTTCCAGTTCCCAACACTCAGACAGCCACCTCCATCATTTCTT

GCCACAATGGAGGAGTACATCAAGGAGGCACCTCAGTCAGCTTCAGTACATAAAAGAGTGGAGTACAGTGAGGGAGAAGACGAAGAAGACGAAGACGACG

AACAAGCAGAAGAGCCTCCTGCACCAGCACAAGTAGAAGCAGAAGATAAGCAAGAAACAACTGTACCAGAGAAAGCTGAAGACCCAGAAGAAAAAGTAGT

ACAAGAACCACTAATACCAACTGATGGCACTGATGATCTTCTGGGGTTGAGCGAAATAAATCCGAAAATAGCGGAACTGGACGAAAACAATGCACTGGCT

CTCGCAATCCTTCCACCCGGCCAAGAAGCATCAACATCAACAAACAACGTGTTGGCTGAACTCGGCCAGCCAAATGCAACTGGATGGGAGCTATCACTCG

TCACTGCACCGAGCAACCAATCACGAAGCAACCCTCCATCACAGACCAAAATGGCTGGCGGATTCGACAAGCTCCTCCTGGATAGCTTGTATGAGGACGA

AACCGCCAGGAAGCAGATTGAGCTGACCAACGCTGGATACAGATCGCATGGTGGAGGAAGAGGAGGAGGAGGAGGATCGTTAGTCTCGATGCAGAGTCCG

TACGAGCAACATCAGCAACAACAACACGACCCGTTCATGATGTCGAATAGTATAGCTCCGCCTACGAACGTCCAGCTGGCTATGACGGCTCAACACATGC

AGCTCTACTCATGGCAACATCATCAGCAGCAACAATTGTCGTCGTTGCTGGTGCCTTTTCAAGGCATGGATCCGTATCAGCAGCATCAGATGACGGACTT

GAACCCGTTTGGGGATCCGTTTTCAAGTTCGAGTAGTGGTTCGCAGAATCATGTTCGACATAGTGATAATCGTATGTTGTTGTAG

AA sequence

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>Lus10025462 pacid=23150901 polypeptide=Lus10025462 locus=Lus10025462.g ID=Lus10025462.BGIv1.0 annot-version=v1.0

MGTFTSFRKAYGALKDTTKVGLAKVNSDFKDLDIAIVKATNHVECPPKERHVRRIFSATSVIRPRADVAYCIHALAKRLSKTKNWVVAIKVLIVIHRTLR

EGDPTFREELLNFAQRGKILQISNFKDDSGMNAWDCSAWCRAYAQFLEERLECFRVLKYDIEAERLSKLSPSLSKVNTRTRILNRTELLDQLPALQQLLY

RLIGCQPEGTAYSNYLVQYALALILKESFKIYCAINDGIINLVDMFFDMSRHDAIKALTIYKRAGQQAENLAEFYEQCKGLDLARTFQFPTLRQPPPSFL

ATMEEYIKEAPQSASVHKRVEYSEGEDEEDEDDEQAEEPPAPAQVEAEDKQETTVPEKAEDPEEKVVQEPLIPTDGTDDLLGLSEINPKIAELDENNALA

LAILPPGQEASTSTNNVLAELGQPNATGWELSLVTAPSNQSRSNPPSQTKMAGGFDKLLLDSLYEDETARKQIELTNAGYRSHGGGRGGGGGSLVSMQSP

YEQHQQQQHDPFMMSNSIAPPTNVQLAMTAQHMQLYSWQHHQQQQLSSLLVPFQGMDPYQQHQMTDLNPFGDPFSSSSSGSQNHVRHSDNRMLL

DESeq2's median of ratios [FLAX]

Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G25940			ENTH/ANTH/VHS superfamily prot...		Lus10025462 [exp]	0	1

Lus10025462 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.

Plant FIBer expression Database

Lus10025462 [FLAX]

DESeq2's median of ratios [FLAX]

Coexpressed genes

Lus10025462 coexpression network