Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G18850 525 / 0 SET domain-containing protein (.1.2) AT3G07670 84 / 5e-17 Rubisco methyltransferase family protein (.1) AT1G14030 81 / 8e-16 Rubisco methyltransferase family protein (.1) AT4G29930 50 / 8e-07 bHLH bHLH027 basic helix-loop-helix (bHLH) DNA-binding superfamily protein AT5G57150 46 / 2e-05 bHLH bHLH035 basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006953 [exp] 973 / 0 AT2G18850 548 / 0.0 SET domain-containing protein (.1.2) Lus10006951 [exp] 97 / 1e-22 AT5G57150 243 / 2e-81 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Lus10012309 [exp] 81 / 9e-16 AT3G07670 756 / 0.0 Rubisco methyltransferase family protein (.1) Lus10016087 [exp] 65 / 9e-11 AT3G07670 657 / 0.0 Rubisco methyltransferase family protein (.1) Lus10019677 [exp] 46 / 4e-05 AT1G01920 262 / 5e-84 SET domain-containing protein (.1.2) Lus10034599 [exp] 46 / 7e-05 AT1G24610 607 / 0.0 Rubisco methyltransferase family protein (.1) Lus10021783 [exp] 44 / 0.0004 AT1G24610 643 / 0.0 Rubisco methyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G168900 [exp] 617 / 0 AT2G18850 628 / 0.0 SET domain-containing protein (.1.2) Potri.018G141800 [exp] 89 / 1e-19 AT5G57150 256 / 6e-86 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Potri.006G074900 [exp] 86 / 2e-18 AT5G57150 200 / 3e-64 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Potri.014G169300 [exp] 86 / 1e-17 AT3G07670 754 / 0.0 Rubisco methyltransferase family protein (.1) Potri.008G090500 [exp] 79 / 2e-15 AT1G14030 630 / 0.0 Rubisco methyltransferase family protein (.1) Potri.018G141500 [exp] 52 / 3e-07 AT5G57150 214 / 1e-69 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Potri.014G077700 [exp] 49 / 9e-06 AT1G01920 729 / 0.0 SET domain-containing protein (.1.2) Potri.018G141600 [exp] 45 / 6e-05 AT5G57150 191 / 2e-60 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Potri.018G141700 [exp] 43 / 0.0004 AT5G57150 205 / 4e-66 basic helix-loop-helix (bHLH) DNA-binding superfamily protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10025463 pacid=23150866 polypeptide=Lus10025463 locus=Lus10025463.g ID=Lus10025463.BGIv1.0 annot-version=v1.0 ATGGAGCCGATTGATAACATCGGAGAAGAGTACCACAACTACTGGGAAACCAAAATGTTCCTCCATAACGAAGAGCTCGACAGCTGGGCCATGGACGAGG CCTTCTCCGGCTACTATGACTCCAGCTCCCCGGACGGAGCAGCCTCGTCGGCGGCTTCCAAGAACAATCGTATTTTGCAGGATAGACGTTTAAGGACTAG AGTGGAGCTGGAGCTGGATTGTTCATGTTCTACTGATTCGGTTGCTGCTGAGTTGGAGCAGTTGCTTCAAGTAGAAAGGATCATACATTTGGATGAGGTT GAACTGTACTTCAATGATTTCGAAGGGAGCACACCGGTGGGATTCTGCAGTGCCAGGAACGAGGTGGAGGCTTTGAAATCAATCCTTTCCTTGATAAACC ACAAGTTTCCTCAAGAGACATCCATTAAAGGTCAAGCCTTTAGGGCCGCAATCAGCGATAGGATCATGAAAGACTGCATGGGAGGAAATGATATCCCAAA GTGCAGCAGAATTAGTAGTAGGAGTTATGAATGTGGTAACGAAAAGTTGCTGGTAGAATGGGGTGTTAGCAATGGTGTCAAGACAAGTTTGGAGATAGCG TTGGTTGAAGGAGCTGGAAGAGGAACCATAGCAACAAAAGATATGAAATTGGGGGACATTGCCTTGGAGATCCCCGAGCTTCTGATCATCTCCGACGAAC ATGCTCGCCATTCTGATGTGTTTAAAGTATTGAAGAAGATTGGAGGGATTTCTTTAGATACCATGATGTTGTTATGGAGCATGAAAGAACGGCATGACAC TAAATCACAATTCAAGATTTACTTTGATACTTTACCCAAAGAGTTCAACACAGGGCTGAGTTTTGGAGTTGATGCGCTTATGGCTTTGGATGGAACCACA CTTTTGGAAGAGATCATGCAGGCAAAAGAGCACTTGCGTGTTCAATACGAGGAGTTGGTTCCTAACTTGTGCGAAACCTACCCCGATACGTTTCCTTCCA AGTTTTACACATGGGAGAATTACGTATGGGCTTGTGAGCTGTGGTACTCCAACAGTATGAAGGTCTTACCTTCCGAGGGCGGTTCCTTGACTACTTGTTT GATCCCCGTCGTTGGCTTCCTCAATCACTCGCTCTATCCACACATAACCAACTTTGGTACAGTCGATCGTGCAACCGGTACGCTGAAATTCCCACTGTCG AGGCCTTGTTTTGCTGGAGTGCAATGCTGTCTTGGCTATGGCAACCTGTCGAGCTCACAACTGATCACATTCTACGGCTTCTTGCCGCAGGGAGACAACC CGTACGATGTAATTCCGTTAGATATCGATGCGAGTGAAGAAGCTGATCGTTCTCACATGGTACGAGGTACTTGGTTCTCAAACAACCATGGAATGTTCCA TTACGGGTTGCCAACTCCATTGCTGGATCTCTTGCGCAAGGCTCGCAATCATACACCTAATGCCGCAACAATCACAAAGGAGGACATGGAAATGGAGATT GATGTTCTGGAAGACTTGGTTTCCACGTTTAACAGCATGATGGGGAATCTTGGTGATGCAGAAGAAGAGGAAGATGATCATAGGTGGGATGTGAAGTTGG CTTTGGAGTTCAAACACCGGCAAAGAAGGATCGTATCGTCAATTCTGTCTTCTTGTGATGTTGGCATCAATCTGCTGCAAACCCATTTGAGCAAATGTAC AAATTAA
AA sequence Show only first row Show all	>Lus10025463 pacid=23150866 polypeptide=Lus10025463 locus=Lus10025463.g ID=Lus10025463.BGIv1.0 annot-version=v1.0 MEPIDNIGEEYHNYWETKMFLHNEELDSWAMDEAFSGYYDSSSPDGAASSAASKNNRILQDRRLRTRVELELDCSCSTDSVAAELEQLLQVERIIHLDEV ELYFNDFEGSTPVGFCSARNEVEALKSILSLINHKFPQETSIKGQAFRAAISDRIMKDCMGGNDIPKCSRISSRSYECGNEKLLVEWGVSNGVKTSLEIA LVEGAGRGTIATKDMKLGDIALEIPELLIISDEHARHSDVFKVLKKIGGISLDTMMLLWSMKERHDTKSQFKIYFDTLPKEFNTGLSFGVDALMALDGTT LLEEIMQAKEHLRVQYEELVPNLCETYPDTFPSKFYTWENYVWACELWYSNSMKVLPSEGGSLTTCLIPVVGFLNHSLYPHITNFGTVDRATGTLKFPLS RPCFAGVQCCLGYGNLSSSQLITFYGFLPQGDNPYDVIPLDIDASEEADRSHMVRGTWFSNNHGMFHYGLPTPLLDLLRKARNHTPNAATITKEDMEMEI DVLEDLVSTFNSMMGNLGDAEEEEDDHRWDVKLALEFKHRQRRIVSSILSSCDVGINLLQTHLSKCTN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G18850			SET domain-containing protein ...		Lus10025463 [exp]	0	1
AT1G56570		PGN	PENTATRICOPEPTIDE REPEAT PROTE...		Lus10019891 [exp]	2.6	0.7315
AT5G38520			alpha/beta-Hydrolases superfam...		Lus10023788 [exp]	19.4	0.6606
AT4G33990		EMB2758	embryo defective 2758, Tetratr...		Lus10019735 [exp]	24.9	0.6906
AT3G58590			Pentatricopeptide repeat (PPR)...		Lus10020138 [exp]	26.3	0.6535
AT4G17140			pleckstrin homology (PH) domai...		Lus10039773 [exp]	29.4	0.6144
AT3G61415		ASK21	SKP1-like 21 (.1.2)		Lus10018833 [exp]	29.7	0.5996
AT2G31290			Ubiquitin carboxyl-terminal hy...		Lus10034086 [exp]	35.5	0.6325
AT5G19120			Eukaryotic aspartyl protease f...		Lus10041004 [exp]	36.3	0.6025
AT5G45140		NRPC2	nuclear RNA polymerase C2 (.1)		Lus10017504 [exp]	36.9	0.6426
AT5G60040		NRPC1	nuclear RNA polymerase C1 (.1....		Lus10013536 [exp]	38.5	0.6379

Compare expression of checked genes

Lus10025463 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.