Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G19160 550 / 0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT4G30060 543 / 0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT4G25870 512 / 0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT5G57270 501 / 3e-178 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2.3) AT4G31350 492 / 9e-175 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) AT5G25970 238 / 3e-75 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT3G21310 236 / 2e-74 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT1G10280 235 / 2e-73 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT1G73810 234 / 3e-73 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT5G11730 233 / 5e-73 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006952 [exp] 710 / 0 AT2G19160 503 / 9e-179 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10026959 [exp] 508 / 2e-180 AT4G31350 490 / 8e-174 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Lus10020159 [exp] 445 / 2e-154 AT4G31350 423 / 4e-146 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Lus10003499 [exp] 233 / 7e-73 AT3G21310 503 / 3e-179 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10009738 [exp] 232 / 1e-72 AT3G21310 511 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10005504 [exp] 229 / 3e-71 AT5G11730 499 / 1e-177 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10005505 [exp] 229 / 3e-71 AT5G11730 499 / 1e-177 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10040972 [exp] 229 / 6e-71 AT1G10280 529 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10013427 [exp] 226 / 5e-70 AT1G10280 528 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G076600 [exp] 669 / 0 AT2G19160 560 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.018G143900 [exp] 652 / 0 AT2G19160 564 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.001G195900 [exp] 249 / 2e-79 AT3G21310 504 / 8e-180 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.006G233400 [exp] 237 / 1e-74 AT5G11730 557 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.010G121900 [exp] 237 / 2e-74 AT5G11730 409 / 1e-141 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.004G097700 [exp] 235 / 5e-74 AT5G16170 452 / 6e-159 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.018G059100 [exp] 230 / 6e-72 AT5G11730 548 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.003G001700 [exp] 228 / 4e-71 AT1G10280 543 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.015G045400 [exp] 228 / 5e-71 AT1G68390 390 / 2e-134 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.004G228100 [exp] 225 / 5e-70 AT1G10280 512 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF02485 [flax] [poplar] Branch Core-2/I-Branching enzyme
Representative CDS sequence Show only first row Show all	>Lus10025464 pacid=23150880 polypeptide=Lus10025464 locus=Lus10025464.g ID=Lus10025464.BGIv1.0 annot-version=v1.0 ATGAAAGGAGGAGCTAATAAAGGGTGGCGTATAGGAATGGGTGATGTACAGATCTTTCATGGTCAACGCCACCGTCCTCCATTGAAGAGGCCAATATGGA TCATTGTGTTGGTCTCTATGGTCAGCTTGTTCTTGGTTTGTGCCTACATTTATCCGCCGAGAAGTGGTTCAGCTTGTTACATCTTTTCATCAGGAGGGTG TAAGGCTATAGATGGTTGGCTTCCTCCTACTCCAGAAAGGGAACTCACCGATAGCGAGATAGCTTCCCGTGTTTTCATTCGAGATATCTTGAATACCCCT CTTGTTCTACCGAAAACTCCGAAGATTGCTTTCATGTTCTTGACTCCTGGCCAGCTGCCTTTTGAGAAGCTCTGGGAGAAGTTCTTCACTGGTCACGAGG ATAAATTCTCCGTTTATGTGCATGCTTCGAACAACAAACCAGTCCATGTGAGCCGTTACTTTGTCAATCGAGACGTTCGCAGTGAACAGGTGATATGGGG GAAAATATCTATGATTGATGCCGAGAGACGCCTATTAGCCAATGCTCTTCAAGATCCTGATAACCAGCACTTTGTTCTACTTTCTGATAGCTGCATACCA TTGCACAAGTTTGATTACGTCTACAACTATTTGATGTATACAAATGTCAGCTTCCTTGACTGTTTTTATGATCCTGGTCCGCATGGCAATGGCAGATATT CAGAACACATGTTGCCTGAAGTTGAACTGAAAGATTTCAGAAAAGGTGCACAGTGGTTCTCAATGAAGCGGCAGCACGCTCTCATAGTTATTGCTGACAG TCTATACTACTCGAAATTTCGTGACTACTGCAAGCATGGCATGGATGGAGGCAAGAATTGCATAGCGGATGAGCACTATTTGCCAACATTTTTCCACATG ATTGACCCTCAGGGAATTGCAAACTGGTCGGTAACACACGTTGATTGGTCGGAGAGGAAATGGCATCCGAAATCGTACAAGGCTCAAGATATTACACGAG ATCTTTTAAACAATCTTACGTCTATCGATATCAGTGTACATGTCACGAGTGAGGAAAAGATGTTGGATGTGGACGAGCAGCCATGCATATGGAACGGGAT CCAGAGGCCATGCTACTTATTTGCTCGGAAGTTTCGACCAGACACGCAAGATAACCTACTGCAACTCTTCTCCAACCATACAACCATACAATGA
AA sequence Show only first row Show all	>Lus10025464 pacid=23150880 polypeptide=Lus10025464 locus=Lus10025464.g ID=Lus10025464.BGIv1.0 annot-version=v1.0 MKGGANKGWRIGMGDVQIFHGQRHRPPLKRPIWIIVLVSMVSLFLVCAYIYPPRSGSACYIFSSGGCKAIDGWLPPTPERELTDSEIASRVFIRDILNTP LVLPKTPKIAFMFLTPGQLPFEKLWEKFFTGHEDKFSVYVHASNNKPVHVSRYFVNRDVRSEQVIWGKISMIDAERRLLANALQDPDNQHFVLLSDSCIP LHKFDYVYNYLMYTNVSFLDCFYDPGPHGNGRYSEHMLPEVELKDFRKGAQWFSMKRQHALIVIADSLYYSKFRDYCKHGMDGGKNCIADEHYLPTFFHM IDPQGIANWSVTHVDWSERKWHPKSYKAQDITRDLLNNLTSIDISVHVTSEEKMLDVDEQPCIWNGIQRPCYLFARKFRPDTQDNLLQLFSNHTTIQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G19160			Core-2/I-branching beta-1,6-N-...		Lus10025464 [exp]	0	1
AT2G19160			Core-2/I-branching beta-1,6-N-...		Lus10006952 [exp]	1.0	0.8851
AT1G23300			MATE efflux family protein (.1...		Lus10036852 [exp]	4.9	0.6640
AT3G44200		IBO1, ATNEK6	"NIMA \(never in mitosis, gene...		Lus10013338 [exp]	7.1	0.7409
AT4G30080	ARF	ARF16	auxin response factor 16 (.1)		Lus10019940 [exp]	9.8	0.7352
AT1G30000		MNS3	alpha-mannosidase 3 (.1)		Lus10028126 [exp]	11.4	0.7290
AT3G52200		LTA3	Dihydrolipoamide acetyltransfe...		Lus10008412 [exp]	13.4	0.7241
AT5G57330			Galactose mutarotase-like supe...		Lus10041629 [exp]	14.5	0.6435
AT2G29525		AtIPCS3	Arabidopsis Inositol phosphory...		Lus10040720 [exp]	18.0	0.6702
AT1G51980			Insulinase (Peptidase family M...		Lus10035000 [exp]	18.8	0.6708
AT1G51590		MNS1, MANIB	ALPHA-MANNOSIDASE IB, alpha-ma...		Lus10034820 [exp]	19.6	0.7382

Compare expression of checked genes

Lus10025464 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.