Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G30110 1035 / 0 ATHMA2, HMA2 ARABIDOPSIS HEAVY METAL ATPASE 2, heavy metal atpase 2 (.1) AT2G19110 1008 / 0 ATHMA4, HMA4 ARABIDOPSIS HEAVY METAL ATPASE 4, heavy metal atpase 4 (.1) AT4G30120 725 / 0 ATHMA3, HMA3 A. THALIANA HEAVY METAL ATPASE 3, heavy metal atpase 3 (.1) AT5G44790 276 / 2e-78 HMA7, RAN1 copper-exporting ATPase / responsive-to-antagonist 1 / copper-transporting ATPase (RAN1) (.1) AT1G63440 273 / 3e-77 HMA5 heavy metal atpase 5 (.1) AT4G33520 242 / 1e-66 AtHMAC6, HMA6, PAA1 Arabidopsis thaliana heavy metal ATPase 6, P-type ATP-ase 1 (.1.2.3) AT5G21930 225 / 3e-61 ATHMA8, HMA8, PAA2 ARABIDOPSIS HEAVY METAL ATPASE 8, P-type ATPase of Arabidopsis 2 (.1.2.3) AT4G37270 179 / 3e-46 ATHMA1, HMA1 ARABIDOPSIS THALIANA HEAVY METAL ATPASE 1, heavy metal atpase 1 (.1) AT1G17260 93 / 5e-19 AHA10 autoinhibited H\(+\)-ATPase isoform 10, autoinhibited H(+)-ATPase isoform 10 (.1) AT4G30190 86 / 7e-17 PMA2, AHA2 PLASMA MEMBRANE PROTON ATPASE 2, H\(+\)-ATPase 2, H\(+\)-ATPase 2, H(+)-ATPase 2 (.1), H(+)-ATPase 2 (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006955 [exp] 1719 / 0 AT2G19110 1072 / 0.0 ARABIDOPSIS HEAVY METAL ATPASE 4, heavy metal atpase 4 (.1) Lus10006956 [exp] 375 / 2e-123 AT2G19110 303 / 9e-97 ARABIDOPSIS HEAVY METAL ATPASE 4, heavy metal atpase 4 (.1) Lus10038364 [exp] 260 / 1e-72 AT5G44790 1441 / 0.0 copper-exporting ATPase / responsive-to-antagonist 1 / copper-transporting ATPase (RAN1) (.1) Lus10031273 [exp] 257 / 8e-72 AT1G63440 1040 / 0.0 heavy metal atpase 5 (.1) Lus10008309 [exp] 251 / 2e-69 AT1G63440 1491 / 0.0 heavy metal atpase 5 (.1) Lus10036225 [exp] 250 / 3e-69 AT5G44790 1402 / 0.0 copper-exporting ATPase / responsive-to-antagonist 1 / copper-transporting ATPase (RAN1) (.1) Lus10023777 [exp] 234 / 3e-64 AT4G33520 1180 / 0.0 Arabidopsis thaliana heavy metal ATPase 6, P-type ATP-ase 1 (.1.2.3) Lus10019313 [exp] 193 / 8e-51 AT4G37270 1101 / 0.0 ARABIDOPSIS THALIANA HEAVY METAL ATPASE 1, heavy metal atpase 1 (.1) Lus10011510 [exp] 184 / 1e-48 AT4G37270 1000 / 0.0 ARABIDOPSIS THALIANA HEAVY METAL ATPASE 1, heavy metal atpase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G076900 [exp] 1095 / 0 AT4G30110 1051 / 0.0 ARABIDOPSIS HEAVY METAL ATPASE 2, heavy metal atpase 2 (.1) Potri.001G158900 [exp] 273 / 4e-77 AT5G44790 1465 / 0.0 copper-exporting ATPase / responsive-to-antagonist 1 / copper-transporting ATPase (RAN1) (.1) Potri.003G075700 [exp] 273 / 5e-77 AT5G44790 1526 / 0.0 copper-exporting ATPase / responsive-to-antagonist 1 / copper-transporting ATPase (RAN1) (.1) Potri.003G125600 [exp] 271 / 2e-76 AT1G63440 1527 / 0.0 heavy metal atpase 5 (.1) Potri.001G105800 [exp] 266 / 5e-75 AT1G63440 1538 / 0.0 heavy metal atpase 5 (.1) Potri.001G019100 [exp] 263 / 9e-74 AT1G63440 1043 / 0.0 heavy metal atpase 5 (.1) Potri.003G125700 [exp] 253 / 2e-70 AT1G63440 1395 / 0.0 heavy metal atpase 5 (.1) Potri.001G205400 [exp] 229 / 2e-62 AT4G33520 1066 / 0.0 Arabidopsis thaliana heavy metal ATPase 6, P-type ATP-ase 1 (.1.2.3) Potri.003G024000 [exp] 228 / 4e-62 AT4G33520 1078 / 0.0 Arabidopsis thaliana heavy metal ATPase 6, P-type ATP-ase 1 (.1.2.3) Potri.018G047800 [exp] 228 / 6e-62 AT5G21930 1193 / 0.0 ARABIDOPSIS HEAVY METAL ATPASE 8, P-type ATPase of Arabidopsis 2 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [flax] [poplar] HAD PF00702 [flax] [poplar] Hydrolase haloacid dehalogenase-like hydrolase CL0137 [flax] [poplar] PF00122 [flax] [poplar] E1-E2_ATPase E1-E2 ATPase
Representative CDS sequence Show only first row Show all	>Lus10025467 pacid=23150818 polypeptide=Lus10025467 locus=Lus10025467.g ID=Lus10025467.BGIv1.0 annot-version=v1.0 ATGGCAGAAGACGACAAGAAGACGAAGCTACAGAAGAGTTACTTCGACGTTCTCGGCCTCTGCTGCTCGTCGGAGATTCCTCTGGTGGAGAACATCTTGA AGTCGTTGGACGGCGTCAAGGACTTCTCCGTCGTCGTCCCGACTAAGACAGTGATCGTCTTCCACGACTCCCTCCTCATTTCCCAGCTCCAAATCGTCAA GGCTTTGAACCAGGCAAGGTTGGAAGCGAACGTGAGACTTGTCGGGGGCAGTGGTGGAGCGAATTATCGAAAGAGATGGCCGAGTCCGTATGCAATTGGG AGTGGCGTTCTTCTGTTGATTTCATTCCTCAAGTACGTATACCCTCCCATCAAATGGGTGGCAATCGGAGCTGTGGTGGTCGGGGTACCTCCAATCCTCC TCAAAGCCATCGCCTCCGTCCGAAACTCGAGGCTCGATGTCACAATCCTCGTCCTCATCGCCGTGATATCAACTGTGGCAATGAAAGACTACACTGAAGC AGCCACTGTTGTGTTCCTCTTCACCATTGCTGATTGGTTGGAGTCTAGAGCAAGCAACAAGGCAAGTGCGGTGATGACTTCGTTGATGAACATTGCTCCG CAGAAAGCCACGATAGCCGAGAGCGGGGAGGAGGTGGATGTTGACATAGTGAAGTTGAACACAGTCGTGGCTGTCAAGGCTGGCGAGGCCATCCCTATTG ATGGGATTGTGGTGGACGGACAGTGCGATGTTGATGAGAAATCGCTCACTGGGGAGTCGTTTCCGGTGTCTAAGCAGAAGGATTCTACAGTCTGGGCCGG AACAATTAACTTAAACGGCTATATAAGTGTCAGAACTACGGCTCTAGCTGAGGATTGCGTCGTAGCGAAAATGGCTAAACTGGTAGAAGAAGCTCAGAAC AGCAAGTCCAGGACTCAGAGGTTCATCGACAAGTGCGCTCAGTACTATACCCCAGCGATTATACTGATATCGGCGAGCTTTGCGGTGATTCCACTGGCTT TAAGGGTTCACAACAGGAACCATTGGTTTCATCTGGCTCTGGTAGTGCTAGTAAGTGCTTGCCCGTGTGCTCTGGTGCTTTCCACACCAGTTGCAACATT CTGTGCACTAACAAAGGCCGCGACTGCCGGCCTACTCATCAAAGGAGGCGATTACCTCGAGACATTGGCGAAGATTAAGGTCGTTGCGTTCGATAAGACC GGAACCATCACAAGAGGAGACTTTGTTGTTTCGGATTTCAAGTCGGTGAGTGATGAGTTCAGCTCGGAGACGTTGGTTTACTGGGTGTCGAGCATCGAGA GCAAGTCTAGTCATCCGATGGCGGCTGCACTTGTTGACTACGGGAGGTCGCTTTTGATTGAGCCGCGGCCTGAAAATGTGGAGGAGTATGAGAGCATTCC AGGTGAAGGCATTCATGGAAAAATTGATGGAAGAGACATCTACATTGGAAACAAGAAGATTGCTGTGAGAGCTGGATCAGGAGCTGTAGTGCCGATGGCC GAAGGTGGTAGAGATGGAGGAATGACCATTGGATATGTGTACTATGGAGGAACCCTTGCTGGCGTATTCAGTCTCTCCGATAGCTGCAGGACTGGCGTGA AAGAGGCGATTCACGATCTTAAATCGATGGGGATCAGAACTGCAATGCTTACTGGAGATAGTCAAGCTGCAGCTATGCATGCTCAAACACAGCTAGAGAA TGCAATTGAGGAAGTTCATGCAGAGCTATTACCCGAGGACAAGGCGAGGATTGTGGGAGAGTTCAAGAGGCGAGGGCGAACGGCAATGGTTGGAGACGGT ATAAACGATGCCCCTGCATTAGCCACTGCTGATATCGGCATCTCGATGGGAGTTTCAGGTTCGGCGCTTGCTACGGAAACCGGGCATGTGATTTTGATGT CCAACGACATCAGGAAAGTACCCCAAGCTATCAAGCTGGCTCGTAGAGCTCATAGGAAAGTGATCGAGAATGTCGTCTTTTCGATCTGTACAAAAAGTTC CATCCTCGCTTTGGCCTTTGCGGGTCATCCGCTAATCTGGGCGGCTGTTCTTGCTGATGTCGGCACGTGTGTGCTTGTGATCCTCAACAGCATGCTGCTG CTACGTGGGACCCACCACAAACACAAAGAACACCACCATCACGGCAAATCGTCAGCTGCAACTCATAACCACAAAGAGCACCATCACCATCACGGCAAAG GAAATTGTTGTTCTGAGAAAAAAGCTGAGAAGGTGTGCCACTCTGAAAAGACTAAATGCTTCACATCAGAACATGAACATCAGCCTAATCTTCAAACTCA TACTGCAAAGCCTTGTAAAGATTCCAAGTGCGAAAAATCAGCTGGCTGTGGAGCTAATAATGCAACAACTGAAGATTCTACACACTGTCATAAAGAACAG GTAAACAGTCTCCACAACCACGGGTGTTCAAAAACTCATAAGCCTAGCTTATGCACAAGGAAAGAGCATCATGAGACTGAAAGTTCAGAAGAAGTTCACC ATAGCTGTAGGAAAGACGAAACCTTTCTCGAGCAAGAACATGTGCGCCACCACCACGTGGTAGATCATCATGGTAGCACTCTCAATGAAAGCATGGCAAA CCATGAGGATTGCCATTCCACCCATTGTGATCATCCCGATATTCACAGGAGCCCTACTGAATCAACTTGTTGTAGCACTCTGCAGCAGCAGCAACCAGGA AAGGAACCTGCAAAGAAGTGCTGCAAAAGCAACGGCAATCCTTCTGAAAGAATCAGTTGCAAGCCAGTGAGTTCATGCCATGATGGAAAGTCACACAGCC ATCCTTGCAGCAGCGTGGAGAAAAGAGAGATTGGAGGCTGCTGCAAGAGCTACAGGAAAGAATGTTGCAAGAGGAATGGCGGATATCCCCCTGGCTTAGG TGGACGTTTGACTGAAATAGTCATAGAATAG
AA sequence Show only first row Show all	>Lus10025467 pacid=23150818 polypeptide=Lus10025467 locus=Lus10025467.g ID=Lus10025467.BGIv1.0 annot-version=v1.0 MAEDDKKTKLQKSYFDVLGLCCSSEIPLVENILKSLDGVKDFSVVVPTKTVIVFHDSLLISQLQIVKALNQARLEANVRLVGGSGGANYRKRWPSPYAIG SGVLLLISFLKYVYPPIKWVAIGAVVVGVPPILLKAIASVRNSRLDVTILVLIAVISTVAMKDYTEAATVVFLFTIADWLESRASNKASAVMTSLMNIAP QKATIAESGEEVDVDIVKLNTVVAVKAGEAIPIDGIVVDGQCDVDEKSLTGESFPVSKQKDSTVWAGTINLNGYISVRTTALAEDCVVAKMAKLVEEAQN SKSRTQRFIDKCAQYYTPAIILISASFAVIPLALRVHNRNHWFHLALVVLVSACPCALVLSTPVATFCALTKAATAGLLIKGGDYLETLAKIKVVAFDKT GTITRGDFVVSDFKSVSDEFSSETLVYWVSSIESKSSHPMAAALVDYGRSLLIEPRPENVEEYESIPGEGIHGKIDGRDIYIGNKKIAVRAGSGAVVPMA EGGRDGGMTIGYVYYGGTLAGVFSLSDSCRTGVKEAIHDLKSMGIRTAMLTGDSQAAAMHAQTQLENAIEEVHAELLPEDKARIVGEFKRRGRTAMVGDG INDAPALATADIGISMGVSGSALATETGHVILMSNDIRKVPQAIKLARRAHRKVIENVVFSICTKSSILALAFAGHPLIWAAVLADVGTCVLVILNSMLL LRGTHHKHKEHHHHGKSSAATHNHKEHHHHHGKGNCCSEKKAEKVCHSEKTKCFTSEHEHQPNLQTHTAKPCKDSKCEKSAGCGANNATTEDSTHCHKEQ VNSLHNHGCSKTHKPSLCTRKEHHETESSEEVHHSCRKDETFLEQEHVRHHHVVDHHGSTLNESMANHEDCHSTHCDHPDIHRSPTESTCCSTLQQQQPG KEPAKKCCKSNGNPSERISCKPVSSCHDGKSHSHPCSSVEKREIGGCCKSYRKECCKRNGGYPPGLGGRLTEIVIE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G30110		ATHMA2, HMA2	ARABIDOPSIS HEAVY METAL ATPASE...		Lus10025467 [exp]	0	1
AT4G36190			Serine carboxypeptidase S28 fa...		Lus10041817 [exp]	1.4	0.8665
AT5G20540		ATBRXL4, BRX-LI...	BREVIS RADIX-like 4 (.1)		Lus10017164 [exp]	13.0	0.7681
AT3G14360			alpha/beta-Hydrolases superfam...		Lus10003925 [exp]	13.8	0.8076
AT5G08370		ATAGAL2	alpha-galactosidase 2 (.1.2)		Lus10024401 [exp]	14.7	0.7942
AT1G55760			BTB/POZ domain-containing prot...		Lus10027101 [exp]	17.2	0.7862
AT3G26720			Glycosyl hydrolase family 38 p...		Lus10012578 [exp]	21.7	0.8009
AT1G43700	bZIP	SUE3, AtbZIP51,...	sulphate utilization efficienc...		Lus10042802 [exp]	24.0	0.7358
AT5G65500			U-box domain-containing protei...		Lus10035947 [exp]	24.4	0.7932
AT1G29400		AML5	MEI2-like protein 5 (.1.2)		Lus10007346 [exp]	27.9	0.7519
AT3G49590		ATG13	autophagy-related 13, Autophag...		Lus10034457 [exp]	30.2	0.7330

Compare expression of checked genes

Lus10025467 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.