Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G18890 259 / 3e-86 Protein kinase superfamily protein (.1.2) AT3G05140 203 / 3e-62 RBK2 ROP binding protein kinases 2 (.1) AT5G57670 196 / 1e-58 Protein kinase superfamily protein (.2) AT5G65530 185 / 1e-55 Protein kinase superfamily protein (.1) AT5G10520 175 / 1e-51 RBK1 ROP binding protein kinases 1 (.1) AT5G18910 168 / 1e-48 Protein kinase superfamily protein (.1) AT5G35960 158 / 3e-45 Protein kinase family protein (.1) AT3G09010 130 / 4e-35 Protein kinase superfamily protein (.1) AT4G35030 127 / 9e-35 Protein kinase superfamily protein (.1.2.3) AT1G23540 130 / 5e-34 IGI1, AtPERK12 proline-rich extensin-like receptor kinase 12, INFLORESCENCE GROWTH INHIBITOR 1, proline-rich extensin like receptor kinase, Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006957 [exp] 403 / 6e-142 AT2G18890 459 / 1e-162 Protein kinase superfamily protein (.1.2) Lus10019990 [exp] 200 / 9e-60 AT5G57670 628 / 0.0 Protein kinase superfamily protein (.2) Lus10008192 [exp] 179 / 4e-53 AT5G35960 489 / 4e-172 Protein kinase family protein (.1) Lus10025713 [exp] 172 / 6e-51 AT5G65530 461 / 8e-161 Protein kinase superfamily protein (.1) Lus10035949 [exp] 173 / 1e-50 AT5G65530 521 / 0.0 Protein kinase superfamily protein (.1) Lus10012776 [exp] 171 / 1e-48 AT5G18910 568 / 0.0 Protein kinase superfamily protein (.1) Lus10012727 [exp] 170 / 1e-48 AT5G65530 457 / 8e-157 Protein kinase superfamily protein (.1) Lus10018959 [exp] 168 / 2e-48 AT3G05140 512 / 8e-180 ROP binding protein kinases 2 (.1) Lus10034000 [exp] 169 / 1e-47 AT5G18910 568 / 0.0 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G091200 [exp] 280 / 3e-93 AT2G18890 469 / 8e-166 Protein kinase superfamily protein (.1.2) Potri.006G166600 [exp] 265 / 2e-87 AT2G18890 463 / 3e-163 Protein kinase superfamily protein (.1.2) Potri.006G173700 [exp] 208 / 6e-63 AT5G57670 654 / 0.0 Protein kinase superfamily protein (.2) Potri.018G096100 [exp] 205 / 8e-62 AT5G57670 619 / 0.0 Protein kinase superfamily protein (.2) Potri.013G028100 [exp] 178 / 1e-52 AT3G05140 548 / 0.0 ROP binding protein kinases 2 (.1) Potri.014G136300 [exp] 171 / 3e-50 AT5G35960 556 / 0.0 Protein kinase family protein (.1) Potri.010G027301 [exp] 166 / 2e-47 AT5G18910 527 / 0.0 Protein kinase superfamily protein (.1) Potri.007G011700 [exp] 160 / 1e-45 AT5G10520 552 / 0.0 ROP binding protein kinases 1 (.1) Potri.007G102400 [exp] 141 / 9e-38 AT5G63940 722 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.005G067000 [exp] 136 / 4e-36 AT5G63940 690 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10025468 pacid=23150856 polypeptide=Lus10025468 locus=Lus10025468.g ID=Lus10025468.BGIv1.0 annot-version=v1.0 ATGAAGTACATCAGAACCAACAGCCTGAAACGCCTCTTCTCCTTAGTCCGCCGCACCCTCGAAGAACACGACCACCACCATCTAACCATCGGACCACCAA TCCTCACCACAAATATCGACTCCCCGCCAGCGAAACCCACCTGGAAATGCTTCTCCTACGAGGAAATCTCCTTCGCGACCGAGTCCTTCAACCCTCGCAA CATTGTTGGAAGAGGCGGGTATGCCGAAGTCTACAGAGGAATCCTCCCTGGAACAGGCGAACTCGTCGCTGTGAAACGGCTGACCAAGTCGTGCACCGAC GAGAGGAAAGAGAAGGAGTTTCTGATGGAGATCGGGACCATCGGCCACGTTAGCCATCCAAACGTTCTTCCGTTAGTCGGATGCTGCATCGATAATGGAC TCTACCTCATTTTCCGTTACTCCTCCGTCGGCTCTCTCGCTTCCCTCCTCCACGGGGAGGATTGGAGAGTGTTGGATTGGGGGAGAAGGTACAAAATTGC GATCGGTACGGCGAAAGGGATCAATTATTTGCATAAAGGATGCCAACGGAGGATCATCCATCGGGATATTAAGTCGTCGAATGTTCTTCTGACTGAAGAC TATGAGCCCCTGGTGTTGATGGTAATGGTAGATGAAGGGGAGATGGGAAAAGAGAGGTGGAAGATGGGAGAAGAAGAGCAAGAAGATGAATTTTGGGGGT TTGAAGATGATCTTGAATGTGACACTTGTTGCTCCATGTCTCCAGCTTCTTCTTCTTCTATCAATAATATTAATGATTCCCCACAAGATTCCTTTTCCAT GTCTACTATTATTACCACTACTCCTACCCCAATTCCTTCTTAA
AA sequence Show only first row Show all	>Lus10025468 pacid=23150856 polypeptide=Lus10025468 locus=Lus10025468.g ID=Lus10025468.BGIv1.0 annot-version=v1.0 MKYIRTNSLKRLFSLVRRTLEEHDHHHLTIGPPILTTNIDSPPAKPTWKCFSYEEISFATESFNPRNIVGRGGYAEVYRGILPGTGELVAVKRLTKSCTD ERKEKEFLMEIGTIGHVSHPNVLPLVGCCIDNGLYLIFRYSSVGSLASLLHGEDWRVLDWGRRYKIAIGTAKGINYLHKGCQRRIIHRDIKSSNVLLTED YEPLVLMVMVDEGEMGKERWKMGEEEQEDEFWGFEDDLECDTCCSMSPASSSSINNINDSPQDSFSMSTIITTTPTPIPS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G18890			Protein kinase superfamily pro...		Lus10025468 [exp]	0	1
AT3G01650		RGLG1	RING domain ligase1 (.1)		Lus10036879 [exp]	1.4	0.9694
AT4G15093			catalytic LigB subunit of arom...		Lus10034361 [exp]	3.5	0.9730
AT4G21390		B120	S-locus lectin protein kinase ...		Lus10006742 [exp]	3.7	0.9579
AT3G17980		AtC2	Arabidopsis thaliana C2 domain...		Lus10017629 [exp]	6.6	0.9620
AT5G01180		ATPTR5	ARABIDOPSIS THALIANA PEPTIDE T...		Lus10040698 [exp]	7.3	0.9595
AT2G03340	WRKY	WRKY3	WRKY DNA-binding protein 3 (.1...		Lus10000173 [exp]	8.3	0.9641
AT3G52870			IQ calmodulin-binding motif fa...		Lus10035595 [exp]	9.2	0.9527
AT2G03340	WRKY	WRKY3	WRKY DNA-binding protein 3 (.1...		Lus10036800 [exp]	11.4	0.9562
AT1G72310		ATL3	RING/U-box superfamily protein...		Lus10016427 [exp]	12.4	0.9606
AT5G65380			MATE efflux family protein (.1...		Lus10012741 [exp]	13.6	0.9573

Compare expression of checked genes

Lus10025468 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.