Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G57520 89 / 7e-23 C2H2ZnF ATZFP2, ZFP2 zinc finger protein 2 (.1) AT1G80730 74 / 1e-16 C2H2ZnF ATZFP1, ZFP1 ARABIDOPSIS THALIANA ZINC-FINGER PROTEIN 1, zinc-finger protein 1 (.1) AT1G24625 72 / 5e-16 C2H2ZnF ZFP7 zinc finger protein 7 (.1) AT1G66140 71 / 3e-15 C2H2ZnF ZFP4 zinc finger protein 4 (.1) AT5G25160 66 / 1e-13 C2H2ZnF ZFP3 zinc finger protein 3 (.1) AT5G10970 66 / 1e-13 C2H2ZnF C2H2 and C2HC zinc fingers superfamily protein (.1) AT5G14010 63 / 6e-13 C2H2ZnF KNUCKLES, KNU KNUCKLES, C2H2 and C2HC zinc fingers superfamily protein (.1) AT5G01860 61 / 1e-11 C2H2ZnF C2H2 and C2HC zinc fingers superfamily protein (.1) AT3G58070 53 / 6e-09 C2H2ZnF GIS GLABROUS INFLORESCENCE STEMS, C2H2 and C2HC zinc fingers superfamily protein (.1) AT1G67030 52 / 1e-08 C2H2ZnF ZFP6 zinc finger protein 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006960 [exp] 214 / 2e-72 AT5G57520 92 / 2e-24 zinc finger protein 2 (.1) Lus10014350 [exp] 73 / 5e-16 AT1G80730 110 / 1e-29 ARABIDOPSIS THALIANA ZINC-FINGER PROTEIN 1, zinc-finger protein 1 (.1) Lus10013243 [exp] 73 / 8e-16 AT1G66140 125 / 3e-34 zinc finger protein 4 (.1) Lus10030764 [exp] 73 / 9e-16 AT1G66140 124 / 1e-33 zinc finger protein 4 (.1) Lus10028997 [exp] 70 / 3e-15 AT1G24625 103 / 1e-27 zinc finger protein 7 (.1) Lus10003681 [exp] 70 / 4e-15 AT1G24625 112 / 9e-31 zinc finger protein 7 (.1) Lus10018328 [exp] 64 / 4e-13 AT5G10970 94 / 6e-24 C2H2 and C2HC zinc fingers superfamily protein (.1) Lus10017125 [exp] 64 / 5e-13 AT5G10970 95 / 4e-24 C2H2 and C2HC zinc fingers superfamily protein (.1) Lus10008698 [exp] 64 / 2e-12 AT1G80730 86 / 2e-19 ARABIDOPSIS THALIANA ZINC-FINGER PROTEIN 1, zinc-finger protein 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G169800 [exp] 96 / 2e-25 AT5G57520 94 / 7e-25 zinc finger protein 2 (.1) Potri.018G094300 [exp] 89 / 4e-23 AT5G57520 108 / 9e-31 zinc finger protein 2 (.1) Potri.006G261700 [exp] 79 / 4e-18 AT5G10970 166 / 4e-50 C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.003G180600 [exp] 77 / 2e-17 AT5G10970 144 / 1e-41 C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.004G084100 [exp] 76 / 5e-17 AT1G66140 164 / 6e-50 zinc finger protein 4 (.1) Potri.018G021400 [exp] 76 / 6e-17 AT5G10970 165 / 8e-50 C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.017G134800 [exp] 76 / 6e-17 AT1G66140 165 / 3e-50 zinc finger protein 4 (.1) Potri.001G047500 [exp] 76 / 9e-17 AT5G10970 143 / 5e-41 C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.010G102700 [exp] 74 / 1e-16 AT1G66140 157 / 4e-47 zinc finger protein 4 (.1) Potri.008G138000 [exp] 74 / 2e-16 AT1G66140 155 / 2e-46 zinc finger protein 4 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10025471 pacid=23150806 polypeptide=Lus10025471 locus=Lus10025471.g ID=Lus10025471.BGIv1.0 annot-version=v1.0 ATGGACCATGATGATGAGTGCCATTACAACCAAGTGAACCTCAACCTAATCCTCGAGCCGTCTTCTTCCTCTTCTACCACTTCGTCCCCTAGGGGTGGTC CAGCTGCTGTCGATCACCTTCCGCGTGTTTTCTCTTGCAACTACTGCGAGCGCAAGTTCTACAGCTCGCAGGCGCTTGGCGGCCACCAGAACGCCCACAA GCTCGAGCGAACCCTGGCCAAGAAGAGTCGCGACATTTTAGGCGGCTCTCTGAGTAGGAGGGTTAATGGTGGTGGTGGTTGGAGCCACCGCATGCATGAC TCCTCCTCGTCTTCGGGCCATGGAGGAATAAGGGTGGGGGTTAAACCAGAGCGGCGTGGGCAGTATCGAAATGAGTATGGGGATGTAGCGGAAGATCGTG GTTCGTGGTACGTGGAGAGTGATCATCATGTTCAAGAAGAGTTCAGTCATCTTGACTTGTCTTTAAGACTTTGA
AA sequence Show only first row Show all	>Lus10025471 pacid=23150806 polypeptide=Lus10025471 locus=Lus10025471.g ID=Lus10025471.BGIv1.0 annot-version=v1.0 MDHDDECHYNQVNLNLILEPSSSSSTTSSPRGGPAAVDHLPRVFSCNYCERKFYSSQALGGHQNAHKLERTLAKKSRDILGGSLSRRVNGGGGWSHRMHD SSSSSGHGGIRVGVKPERRGQYRNEYGDVAEDRGSWYVESDHHVQEEFSHLDLSLRL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G57520	C2H2ZnF	ATZFP2, ZFP2	zinc finger protein 2 (.1)		Lus10025471 [exp]	0	1
AT3G18180			Glycosyltransferase family 61 ...		Lus10032457 [exp]	2.0	0.7771
					Lus10000351 [exp]	8.2	0.7043
					Lus10002886 [exp]	10.1	0.7043
AT5G55050			GDSL-like Lipase/Acylhydrolase...		Lus10021543 [exp]	11.7	0.7043
					Lus10014748 [exp]	13.0	0.7043
AT3G26880			Plant self-incompatibility pro...		Lus10022631 [exp]	14.3	0.7043
AT3G25050		XTH3	xyloglucan endotransglucosylas...		Lus10022782 [exp]	15.4	0.7043
					Lus10023108 [exp]	16.5	0.7043
AT5G50790		SWEET10, AtSWEE...	Nodulin MtN3 family protein (....		Lus10023249 [exp]	17.5	0.7043
					Lus10024321 [exp]	18.4	0.7043

Compare expression of checked genes

Lus10025471 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.