Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G18950 471 / 9e-166 ATHPT, VTE2, TPT1, HPT1 VITAMIN E 2, homogentisate phytyltransferase 1 (.1) AT3G11945 136 / 6e-36 PDS2, ATHST PHYTOENE DESATURATION 2, homogentisate prenyltransferase (.1.2) AT3G51820 48 / 1e-05 PDE325, ATG4, G4, CHLG PIGMENT DEFECTIVE 325, UbiA prenyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006961 [exp] 670 / 0 AT2G18950 519 / 0.0 VITAMIN E 2, homogentisate phytyltransferase 1 (.1) Lus10016221 [exp] 129 / 2e-33 AT3G11945 538 / 0.0 PHYTOENE DESATURATION 2, homogentisate prenyltransferase (.1.2) Lus10029321 [exp] 120 / 6e-30 AT3G11945 399 / 5e-138 PHYTOENE DESATURATION 2, homogentisate prenyltransferase (.1.2) Lus10002850 [exp] 53 / 2e-07 AT3G51820 518 / 0.0 PIGMENT DEFECTIVE 325, UbiA prenyltransferase family protein (.1) Lus10003379 [exp] 50 / 4e-06 AT3G51800 597 / 0.0 A. THALIANA ERBB-3 BINDING PROTEIN 1, metallopeptidase M24 family protein (.1.2.3) Lus10027815 [exp] 49 / 4e-06 AT3G51820 604 / 0.0 PIGMENT DEFECTIVE 325, UbiA prenyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G090700 [exp] 503 / 4e-178 AT2G18950 529 / 0.0 VITAMIN E 2, homogentisate phytyltransferase 1 (.1) Potri.006G166100 [exp] 350 / 3e-118 AT2G18950 379 / 2e-130 VITAMIN E 2, homogentisate phytyltransferase 1 (.1) Potri.018G022000 [exp] 343 / 7e-115 AT2G18950 369 / 2e-125 VITAMIN E 2, homogentisate phytyltransferase 1 (.1) Potri.006G197600 [exp] 136 / 4e-36 AT3G11945 560 / 0.0 PHYTOENE DESATURATION 2, homogentisate prenyltransferase (.1.2) Potri.016G119400 [exp] 53 / 2e-07 AT3G51820 541 / 0.0 PIGMENT DEFECTIVE 325, UbiA prenyltransferase family protein (.1) Potri.006G102100 [exp] 49 / 3e-06 AT3G51820 547 / 0.0 PIGMENT DEFECTIVE 325, UbiA prenyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0613 [flax] [poplar] Terp_synthase PF01040 [flax] [poplar] UbiA UbiA prenyltransferase family
Representative CDS sequence Show only first row Show all	>Lus10025472 pacid=23150830 polypeptide=Lus10025472 locus=Lus10025472.g ID=Lus10025472.BGIv1.0 annot-version=v1.0 ATGGAGTCTCTCCTCCTCCTCCCTTCTTCCCCTCAGCCACCATCGTTGCTCCCCTCTGGTGGAAGGAGTTGGATGAACGTTGCTCTTAAGTCAGGCATCC TCCCCAAGAGAATAGTTAAAGCTTCCACATCCACAACAGCAAATGCCAGACTAGAAGGATCATGTAGTTTATTAAGGCTGCAGAGAAACGGTGGTAAGCA TCATCAAGTGAGAGCTATCAAGTTCGTAGTCAATGCCACCTCCGGACAGCCACTCGAATCCGAGCCAGGAGGTTATGGTCCTGACTCCAAGAGTACTCTA GACTCGCTTAAGAAATCGTTGGATGCTTTCTACAGATTTTCTCGGCCTCATACTGTCGTTGGGACGGCTTTGAGCATTGTATCGGTTTCGTTACTCTCGG TTGAGAAGCTTGCTGACATTTCTCCACTCTTTTGCACCGGGCTGCTCGAGGCTGTGGCTGCTGCTCTTATGATGAACATTTACATCGTTGGCTTAAACCA GTTGACCGACATCGAGATAGACAAGGTTAACAAGCCATACCTTCCATTGGCATCCGGGGAGTATTCCGTGGGAACCGGTGTCTTCATTGTTGCGTCTTTC TCCGTCATGAGTTTCTGGCTCGGATGGATTGTTAAATCATGGCCACTATTTTGGGCTCTCTTCATCAGTTTTGTCCTTGGCACTGCCTATTCAATCAATC TGCCACTATTGAGATGGAAGCGATTCGCTTTCGTAGCAGCATTGTGCATACTGGCAGTCCGTGCAGTGATTGTTCAAATCTGTTTCTATCTCCATATGCA GATGCATGTTTTCGGAAGAAGTGCCTTCTTTTCAAGGCCTCTTATTTTCGCAACTGCGTTCATGAGCTTCTTCTCCGTCGTAATAGCTTTGTTCAAGGAT ATACCAGATATGGAGGGTGATAAGATATTCGGCATCAAGTCTTTTACCGTACAATTGGGCCAAAAACGGGTATTCTGGACGTGCATTGCCTTGCTCGAAA TTGCTTATGGCATCTCGATGTTCATAGGGGCAGCATCACCCTTCGTCTGGAGCAAATGCATCACGGTTGTTGGGCATACCATCTTGGCCTTCCTGCTGTG GAACCGCGCGAAATCAGTCGATCTGACCAGCAAAGCCGCGATAACTTCTTGCTACATGTTCGTGTGGAAGGTAACCAGAACATACTGTTTCTGTTTCGAT TCATACAGGAAACGAATCGGCACTGATCGTATTCCTGTTTCGATTTTGTCTTTCGCAGCTGTTTTACGCTGA
AA sequence Show only first row Show all	>Lus10025472 pacid=23150830 polypeptide=Lus10025472 locus=Lus10025472.g ID=Lus10025472.BGIv1.0 annot-version=v1.0 MESLLLLPSSPQPPSLLPSGGRSWMNVALKSGILPKRIVKASTSTTANARLEGSCSLLRLQRNGGKHHQVRAIKFVVNATSGQPLESEPGGYGPDSKSTL DSLKKSLDAFYRFSRPHTVVGTALSIVSVSLLSVEKLADISPLFCTGLLEAVAAALMMNIYIVGLNQLTDIEIDKVNKPYLPLASGEYSVGTGVFIVASF SVMSFWLGWIVKSWPLFWALFISFVLGTAYSINLPLLRWKRFAFVAALCILAVRAVIVQICFYLHMQMHVFGRSAFFSRPLIFATAFMSFFSVVIALFKD IPDMEGDKIFGIKSFTVQLGQKRVFWTCIALLEIAYGISMFIGAASPFVWSKCITVVGHTILAFLLWNRAKSVDLTSKAAITSCYMFVWKVTRTYCFCFD SYRKRIGTDRIPVSILSFAAVLR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G18950		ATHPT, VTE2, TP...	VITAMIN E 2, homogentisate phy...		Lus10025472 [exp]	0	1
AT4G10030			alpha/beta-Hydrolases superfam...		Lus10041047 [exp]	2.0	0.8368
AT1G36320			unknown protein		Lus10033109 [exp]	2.2	0.8600
AT3G01650		RGLG1	RING domain ligase1 (.1)		Lus10033043 [exp]	3.7	0.8565
AT2G07050		CAS1	cycloartenol synthase 1 (.1)		Lus10032146 [exp]	4.2	0.8483
AT4G19420			Pectinacetylesterase family pr...		Lus10034766 [exp]	15.2	0.8262
AT3G06350		EMB3004, MEE32	MATERNAL EFFECT EMBRYO ARREST ...		Lus10005928 [exp]	15.5	0.8044
AT1G68730			Zim17-type zinc finger protein...		Lus10019154 [exp]	21.6	0.7927
AT1G72880			Survival protein SurE-like pho...		Lus10037627 [exp]	24.0	0.7415
AT5G51140			Pseudouridine synthase family ...		Lus10022437 [exp]	24.2	0.8128
AT1G78980		SRF5	STRUBBELIG-receptor family 5 (...		Lus10035703 [exp]	28.3	0.7532

Compare expression of checked genes

Lus10025472 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.