Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G18940 951 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G02860 536 / 2e-179 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63130 230 / 3e-65 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G06920 233 / 8e-65 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G74850 228 / 5e-63 PDE343, PTAC2 PIGMENT DEFECTIVE 343, plastid transcriptionally active 2 (.1) AT1G63080 222 / 1e-62 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G09900 220 / 3e-62 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT5G01110 223 / 5e-62 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G62910 217 / 9e-61 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62930 215 / 4e-60 RPF3 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006962 [exp] 1547 / 0 AT2G18940 976 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10020002 [exp] 1038 / 0 AT2G18940 1015 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015530 [exp] 1029 / 0 AT2G18940 1010 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10002107 [exp] 499 / 1e-165 AT5G02860 1040 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013894 [exp] 503 / 3e-165 AT5G02860 1047 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10000036 [exp] 311 / 8e-101 AT2G18940 279 / 4e-89 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10000035 [exp] 311 / 1e-100 AT2G18940 281 / 6e-90 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10033127 [exp] 228 / 8e-63 AT1G74850 1179 / 0.0 PIGMENT DEFECTIVE 343, plastid transcriptionally active 2 (.1) Lus10043417 [exp] 218 / 2e-59 AT3G06920 1358 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G166200 [exp] 970 / 0 AT2G18940 1082 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.009G092100 [exp] 535 / 7e-179 AT5G02860 1146 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G297300 [exp] 534 / 2e-178 AT5G02860 1129 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G217600 [exp] 234 / 7e-66 AT2G16880 677 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G014100 [exp] 235 / 2e-65 AT3G06920 1404 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G046000 [exp] 229 / 8e-65 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G257300 [exp] 220 / 8e-62 AT1G62930 481 / 3e-163 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G180000 [exp] 220 / 1e-61 AT3G16010 950 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.019G043101 [exp] 225 / 2e-61 AT5G14770 796 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.015G069100 [exp] 223 / 2e-61 AT1G74850 1268 / 0.0 PIGMENT DEFECTIVE 343, plastid transcriptionally active 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10025473 pacid=23150781 polypeptide=Lus10025473 locus=Lus10025473.g ID=Lus10025473.BGIv1.0 annot-version=v1.0 ATGGAATCCATCATCTTACTCGACAAGCCAATCTACCCACCGATAATCAACTGCCATTCACCTTACCAGCAACCCAATCCATTCACCAAATTCACCTCTG CCGTCCTCTCTCCCCCGCCGCCGCCGCTTCCTCCTCCCCGCTGCTCATTTCCTCAAACTCGCCATTTCGAACCTATCCTACACCAGCTCCTCCACCTCTC CCCCAATTCCAAACTCAACAGCTCCCGCTTCACTCCACTTCGCGTGTCACCCAACGACAACAGTTCGTCCGCCGTCGCCGTCGCCGTCGATCACTTGTCA AAAGATGGTAAGCTCATGGTTGATTCCATCATGTCCCTCCCGCTCCACCACCTCCCTGATTTCTTCGATTCCCACAAGTCTGAATTAGTTCGACTCGACT TACTTAGTTTGCTTAAAGCGTTGGATCGTTCTGGGAATTGGCAAAGAGCTCTACTTTTGTTTCAATGGGCGGTCTTAAGTGATAAGAAGATGGATAATCA GGGGGTTGAACTTATGGTGAGAATTCTAGGTAGAGAGTCGTGTTACACTATTGCATGCCAACTGTTCGATAAAATGCCTATTAGAGAATACGAACTCGAT GTCAGGGCGTTGACCACCATTCTCCATGCGTATTCTCGCGCTGGGAAGTACGATAAAGCAATCAAATTGTTCCAAAGGATGAAAGATTCCGGATTGAAAC CGAATCTGGTCGCTTACAATATAATGCTTGATGCTTATGGCAAGATGGGCGGTTCGTGGAGTCGAATTTTGAGCCTCTTAGATGAGATTAGGTCTGTAGG GCTGGAATTCGACGAGTTCACGTGCAGTACTGTGATATCAGCTTGTGGGAGAGAAAGATTGTTGGCTGAAGCTAGGGAGTTCTTCGCCGGACTCAAATCT TCGGGATATGTTCCGGGGACGGTTACTTACAATGCATTCCTGCAGGTGTTTTCGAAATCCGGTCTTTACTTGGAAGCTTTAAGCATTCTTAACGAGATGG AGGAGAACGATTGTGTAACCGATTCCGTGACTTACAACGAAATCGTTTCTGCCTATGTCAGAGCAGGTTTCGTCGAGGAAGGCGCTGATGTCATCGATAC GATGATCCTTAAAGGAGTAATGCCGGATGCTGTCACGTACACTACCGTGATCAATGCGTATGGTAAATCGGGAGAGATGGAGAAGGCGATCGGGTTATTC GAGCAGATGAAGAAGTGGGGGTGTGTCCCTGTTGCCTGCACTTACAATGCCATCCTTATGATGCTGGGAAACAAGTCGAAGTCGGAGGAGATGTTGATGT TACTCTCCGATATGAGGTCGAATCGATGTGCTCCTAACGATGTTACGTGGAACACGATGCTTTCCATGTGTGGTAAGGTAGGGATGCAGAGTTATGTCAG TCGTGTTTTTGAAGAGATGAAAGATTCCGGTTTCGAGCCTGATAGGAATACTTTCAACAATTTGATCAGTGCCTATGGCAGGTGTGGATCAGAGGCTACC GTGTCGGAGATGCACGAGAAAATGATCGAATCTGGTTTCGCACCGAATGTTTCTACTTACAATGCGCTTTTGAATGCTCTGGCTTTTAAAGGGGACTGGA AAGGAGCAGAGTTACTGATTCAAGACATGAGAAACAAAGGTTTCAACCCGAGCGAAAGCTCTTACTCGATCATTCTGAATGCGTATGCGAAAGCGAAGAA CATTGCAGGCATTGAGAGGATTGAGAATGACATCTATAAGGGTGATATCTTCCCAAGCCGGTTGCTTCTTAGAACACTTGCTCTTGCATTCCACAAATGC AGATGGCTAGCAGGGGCGGAAAGGGCGTTTGCTGCGTTTCAGAGACACGGTTACAAACCAGACCTGATTCTGTTCAATTCGATGCTGGCCATGTTTGCAA AATGTAACATGACTGACCGAGCTCATTCGACTCTGAACAGCATTCTCGAGAACGGATTACAGCCGGATCTCGTAACGTATAACAGCTTGATGGACATGTA TGCTCGAGCAAAGGATTGCTGGAAAGCGGAAAAGATCCTCAAGCGTCTGCAGGATGATCCGGTATCAAAATCGAAACCGGACCTTGTCTCATACAACACT GTGATCAAAGGATTCTGCAGACAAGGGCTTATGCAGGAAGCAATGAGAGTGTTCTCCGAGATGAACTTACGAGGAATCCGGCCATGTGTAGTCACGTATA ACACGTTTGTTACCGGGTATGCAGGACGAGGGATGTTTGAGGAGATCAAAGATGTTGTGAGGTATATGATTGAGCATGATTGCCGACCGAACCAGCTGAC GTACAAGATTGCAGTTACTGGGTATTGCAAGGCAAGGAAATACAACGAAGCTATAGAGTTCGTCTCGCAGATTAGATGCATAGACAATGCCTTCGACGAC AAATCTGAGCACAGACTTGCTGGTTACGTTAGAGATATGGTCAAATCATGCTGA
AA sequence Show only first row Show all	>Lus10025473 pacid=23150781 polypeptide=Lus10025473 locus=Lus10025473.g ID=Lus10025473.BGIv1.0 annot-version=v1.0 MESIILLDKPIYPPIINCHSPYQQPNPFTKFTSAVLSPPPPPLPPPRCSFPQTRHFEPILHQLLHLSPNSKLNSSRFTPLRVSPNDNSSSAVAVAVDHLS KDGKLMVDSIMSLPLHHLPDFFDSHKSELVRLDLLSLLKALDRSGNWQRALLLFQWAVLSDKKMDNQGVELMVRILGRESCYTIACQLFDKMPIREYELD VRALTTILHAYSRAGKYDKAIKLFQRMKDSGLKPNLVAYNIMLDAYGKMGGSWSRILSLLDEIRSVGLEFDEFTCSTVISACGRERLLAEAREFFAGLKS SGYVPGTVTYNAFLQVFSKSGLYLEALSILNEMEENDCVTDSVTYNEIVSAYVRAGFVEEGADVIDTMILKGVMPDAVTYTTVINAYGKSGEMEKAIGLF EQMKKWGCVPVACTYNAILMMLGNKSKSEEMLMLLSDMRSNRCAPNDVTWNTMLSMCGKVGMQSYVSRVFEEMKDSGFEPDRNTFNNLISAYGRCGSEAT VSEMHEKMIESGFAPNVSTYNALLNALAFKGDWKGAELLIQDMRNKGFNPSESSYSIILNAYAKAKNIAGIERIENDIYKGDIFPSRLLLRTLALAFHKC RWLAGAERAFAAFQRHGYKPDLILFNSMLAMFAKCNMTDRAHSTLNSILENGLQPDLVTYNSLMDMYARAKDCWKAEKILKRLQDDPVSKSKPDLVSYNT VIKGFCRQGLMQEAMRVFSEMNLRGIRPCVVTYNTFVTGYAGRGMFEEIKDVVRYMIEHDCRPNQLTYKIAVTGYCKARKYNEAIEFVSQIRCIDNAFDD KSEHRLAGYVRDMVKSC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G18940			Tetratricopeptide repeat (TPR)...		Lus10025473 [exp]	0	1
AT2G19870			tRNA/rRNA methyltransferase (S...		Lus10011129 [exp]	5.9	0.8808
AT3G54090		FLN1	fructokinase-like 1 (.1)		Lus10021118 [exp]	13.6	0.8641
AT3G25660			Amidase family protein (.1)		Lus10007361 [exp]	17.7	0.8656
AT2G18940			Tetratricopeptide repeat (TPR)...		Lus10006962 [exp]	18.7	0.8459
AT5G55280		ATFTSZ1-1, CPFT...	CHLOROPLAST FTSZ, ARABIDOPSIS ...		Lus10016579 [exp]	18.9	0.8523
AT3G15200			Tetratricopeptide repeat (TPR)...		Lus10031837 [exp]	24.9	0.8388
AT3G18110		EMB1270	embryo defective 1270, Pentatr...		Lus10039148 [exp]	25.6	0.8404
AT5G23310		FSD3	Fe superoxide dismutase 3 (.1)		Lus10017378 [exp]	28.9	0.8421
AT2G37220			RNA-binding (RRM/RBD/RNP motif...		Lus10026514 [exp]	29.9	0.8417
AT1G30680			toprim domain-containing prote...		Lus10023379 [exp]	33.8	0.8379

Compare expression of checked genes

Lus10025473 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.