Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G57500 181 / 8e-57 Galactosyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006963 [exp] 227 / 6e-75 AT5G57500 470 / 2e-168 Galactosyltransferase family protein (.1) Lus10019998 [exp] 177 / 6e-55 AT5G57500 475 / 3e-170 Galactosyltransferase family protein (.1) Lus10015527 [exp] 173 / 2e-53 AT5G57500 473 / 2e-169 Galactosyltransferase family protein (.1) Lus10000372 [exp] 129 / 1e-36 AT5G57500 300 / 2e-101 Galactosyltransferase family protein (.1) Lus10006531 [exp] 120 / 2e-34 AT5G57500 202 / 1e-64 Galactosyltransferase family protein (.1) Lus10000407 [exp] 91 / 3e-23 AT5G57500 211 / 2e-68 Galactosyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G094000 [exp] 175 / 2e-54 AT5G57500 493 / 3e-177 Galactosyltransferase family protein (.1) Potri.007G131000 [exp] 130 / 1e-36 AT5G57500 289 / 2e-96 Galactosyltransferase family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10025474 pacid=23150821 polypeptide=Lus10025474 locus=Lus10025474.g ID=Lus10025474.BGIv1.0 annot-version=v1.0 ATGAAGAGCCATCCTTTTATCCTCACCACACTAACCTTCATCCTCTTATTTGGCCTCATAGGCTTCATCAACCAAATCCGGTTCAACCAAATCCTCAATT TCGACCAATGTGCCTACTCCAAACTTACTCCCTCTACCATCACCACTACCACTAGACTAACCCCTTCTTCCTCGTCTCCAGAAACAAGTTCTGAGGACGA GATCCGAATTCTGATAGGTATCCTCATCCTACCAGACCAGTACTCGAAACGTCACTTCCTCCGCATAGTCAACGGGACCCAAAAGTCCCCACCAGGCACG CAAATCGACGTGAAGTTTGTCTTTTGCAACCTCACAAAAGTAGACCAAAAAGTCCTTGTCGTGCTCGAGATAATGTGCTACGACGACGTAATCATCCTCA ATTGCAAGGAGAACATGAACAATGGGAAAACCTACACGTACTTCTCCAGCCTCCCTGGCATCTTCTCTAACGAAAGCCAATCACCGCTGCCTTATCACTA TGTCATGAAAACAGACGACGACACGTAA
AA sequence Show only first row Show all	>Lus10025474 pacid=23150821 polypeptide=Lus10025474 locus=Lus10025474.g ID=Lus10025474.BGIv1.0 annot-version=v1.0 MKSHPFILTTLTFILLFGLIGFINQIRFNQILNFDQCAYSKLTPSTITTTTRLTPSSSSPETSSEDEIRILIGILILPDQYSKRHFLRIVNGTQKSPPGT QIDVKFVFCNLTKVDQKVLVVLEIMCYDDVIILNCKENMNNGKTYTYFSSLPGIFSNESQSPLPYHYVMKTDDDT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G57500			Galactosyltransferase family p...		Lus10025474 [exp]	0	1
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10005361 [exp]	4.5	0.7897
AT5G19790	AP2_ERF	RAP2.11	related to AP2 11 (.1)		Lus10036793 [exp]	5.1	0.8081
AT1G22590	MADS	AGL87	AGAMOUS-like 87 (.1.2)		Lus10023293 [exp]	15.1	0.6681
AT3G30210	MYB	ATMYB121	myb domain protein 121 (.1)		Lus10005079 [exp]	20.0	0.7013
AT2G43870			Pectin lyase-like superfamily ...		Lus10002126 [exp]	27.1	0.7596
AT4G15440		CYP74B2, HPL1	hydroperoxide lyase 1 (.1)		Lus10030032 [exp]	33.3	0.6895
AT3G23280		XBAT35	XB3 ortholog 5 in Arabidopsis ...		Lus10003551 [exp]	38.5	0.6519
AT3G05950			RmlC-like cupins superfamily p...		Lus10035280 [exp]	46.9	0.6072
AT3G29590		AT5MAT	HXXXD-type acyl-transferase fa...		Lus10003345 [exp]	47.2	0.6072
AT3G12500		PR-3, PR3, CHI-...	PATHOGENESIS-RELATED 3, basic ...		Lus10003585 [exp]	47.6	0.6072

Compare expression of checked genes

Lus10025474 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.